Gene : Carub.0006s2200 C. rubella v1.1
Defline:  (1 of 1) PTHR10666//PTHR10666:SF135 - UBIQUITIN // F15I1.6 PROTEIN-RELATED Genomic Order:  2200
Name:  ? Carub.0006s2200 Secondary Identifier:  ? PAC:39248463
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6351 Capsella rubella pathologic  
Crubella PWY-6352 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2200 0.5kb upstream 0.5kb upstream 3753 true scaffold_6: 8254706-8258458 Capsella rubella
Carub.0006s2200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 8257959-8258458 Capsella rubella
Carub.0006s2200 0.5kb downstream 0.5kb downstream 3753 true scaffold_6: 8254206-8257958 Capsella rubella
Carub.0006s2200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 8254206-8254705 Capsella rubella
Carub.0006s2200 1.0kb upstream 1.0kb upstream 4253 true scaffold_6: 8254706-8258958 Capsella rubella
Carub.0006s2200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 8257959-8258958 Capsella rubella
Carub.0006s2200 1.0kb downstream 1.0kb downstream 4253 true scaffold_6: 8253706-8257958 Capsella rubella
Carub.0006s2200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 8253706-8254705 Capsella rubella
Carub.0006s2200 2.0kb upstream 2.0kb upstream 5253 true scaffold_6: 8254706-8259958 Capsella rubella
Carub.0006s2200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 8257959-8259958 Capsella rubella
Carub.0006s2200 2.0kb downstream 2.0kb downstream 5253 true scaffold_6: 8252706-8257958 Capsella rubella
Carub.0006s2200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 8252706-8254705 Capsella rubella
Carub.0006s2200 5.0kb upstream 5.0kb upstream 8253 true scaffold_6: 8254706-8262958 Capsella rubella
Carub.0006s2200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 8257959-8262958 Capsella rubella
Carub.0006s2200 5.0kb downstream 5.0kb downstream 8253 true scaffold_6: 8249706-8257958 Capsella rubella
Carub.0006s2200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 8249706-8254705 Capsella rubella
Carub.0006s2200 10.0kb upstream 10.0kb upstream 13253 true scaffold_6: 8254706-8267958 Capsella rubella
Carub.0006s2200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 8257959-8267958 Capsella rubella
Carub.0006s2200 10.0kb downstream 10.0kb downstream 13253 true scaffold_6: 8244706-8257958 Capsella rubella
Carub.0006s2200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 8244706-8254705 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370293 5261 Brassicaceae View MSA
123840083 5264 Brassicales-Malvales View MSA
124348699 5266 SBM View MSA
124242483 5268 Malvidae View MSA
124070925 5270 Rosid View MSA
123742266 5271 Pentapetalae View MSA
122789753 5272 Eudicot View MSA
122042633 5273 Angiosperm View MSA
121350148 5274 Embryophyte View MSA
123381595 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain