Gene : Carub.0006s2052 C. rubella v1.1
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  2052
Name:  ? Carub.0006s2052 Secondary Identifier:  ? PAC:39248405
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella TRNA-CHARGING-PWY Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2052 0.5kb upstream 0.5kb upstream 4940 true scaffold_6: 7631729-7636668 Capsella rubella
Carub.0006s2052 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7636169-7636668 Capsella rubella
Carub.0006s2052 0.5kb downstream 0.5kb downstream 4940 true scaffold_6: 7631229-7636168 Capsella rubella
Carub.0006s2052 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7631229-7631728 Capsella rubella
Carub.0006s2052 1.0kb upstream 1.0kb upstream 5440 true scaffold_6: 7631729-7637168 Capsella rubella
Carub.0006s2052 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7636169-7637168 Capsella rubella
Carub.0006s2052 1.0kb downstream 1.0kb downstream 5440 true scaffold_6: 7630729-7636168 Capsella rubella
Carub.0006s2052 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7630729-7631728 Capsella rubella
Carub.0006s2052 2.0kb upstream 2.0kb upstream 6440 true scaffold_6: 7631729-7638168 Capsella rubella
Carub.0006s2052 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7636169-7638168 Capsella rubella
Carub.0006s2052 2.0kb downstream 2.0kb downstream 6440 true scaffold_6: 7629729-7636168 Capsella rubella
Carub.0006s2052 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7629729-7631728 Capsella rubella
Carub.0006s2052 5.0kb upstream 5.0kb upstream 9440 true scaffold_6: 7631729-7641168 Capsella rubella
Carub.0006s2052 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7636169-7641168 Capsella rubella
Carub.0006s2052 5.0kb downstream 5.0kb downstream 9440 true scaffold_6: 7626729-7636168 Capsella rubella
Carub.0006s2052 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7626729-7631728 Capsella rubella
Carub.0006s2052 10.0kb upstream 10.0kb upstream 14440 true scaffold_6: 7631729-7646168 Capsella rubella
Carub.0006s2052 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7636169-7646168 Capsella rubella
Carub.0006s2052 10.0kb downstream 10.0kb downstream 14440 true scaffold_6: 7621729-7636168 Capsella rubella
Carub.0006s2052 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7621729-7631728 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361504 5261 Brassicaceae View MSA
123829787 5264 Brassicales-Malvales View MSA
124345364 5266 SBM View MSA
124242500 5268 Malvidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain