Gene : Carub.0006s2072 C. rubella v1.1
Defline:  (1 of 2) PTHR11062:SF46 - GLUCURONOXYLAN GLUCURONOSYLTRANSFERASE F8H-RELATED Genomic Order:  2072
Name:  ? Carub.0006s2072 Secondary Identifier:  ? PAC:39246237
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5980 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2072 0.5kb upstream 0.5kb upstream 2942 true scaffold_6: 7710316-7713257 Capsella rubella
Carub.0006s2072 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7710316-7710815 Capsella rubella
Carub.0006s2072 0.5kb downstream 0.5kb downstream 2942 true scaffold_6: 7710816-7713757 Capsella rubella
Carub.0006s2072 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7713258-7713757 Capsella rubella
Carub.0006s2072 1.0kb upstream 1.0kb upstream 3442 true scaffold_6: 7709816-7713257 Capsella rubella
Carub.0006s2072 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7709816-7710815 Capsella rubella
Carub.0006s2072 1.0kb downstream 1.0kb downstream 3442 true scaffold_6: 7710816-7714257 Capsella rubella
Carub.0006s2072 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7713258-7714257 Capsella rubella
Carub.0006s2072 2.0kb upstream 2.0kb upstream 4442 true scaffold_6: 7708816-7713257 Capsella rubella
Carub.0006s2072 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7708816-7710815 Capsella rubella
Carub.0006s2072 2.0kb downstream 2.0kb downstream 4442 true scaffold_6: 7710816-7715257 Capsella rubella
Carub.0006s2072 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7713258-7715257 Capsella rubella
Carub.0006s2072 5.0kb upstream 5.0kb upstream 7442 true scaffold_6: 7705816-7713257 Capsella rubella
Carub.0006s2072 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7705816-7710815 Capsella rubella
Carub.0006s2072 5.0kb downstream 5.0kb downstream 7442 true scaffold_6: 7710816-7718257 Capsella rubella
Carub.0006s2072 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7713258-7718257 Capsella rubella
Carub.0006s2072 10.0kb upstream 10.0kb upstream 12442 true scaffold_6: 7700816-7713257 Capsella rubella
Carub.0006s2072 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7700816-7710815 Capsella rubella
Carub.0006s2072 10.0kb downstream 10.0kb downstream 12442 true scaffold_6: 7710816-7723257 Capsella rubella
Carub.0006s2072 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7713258-7723257 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375302 5261 Brassicaceae View MSA
123836741 5264 Brassicales-Malvales View MSA
124339528 5266 SBM View MSA
124254055 5268 Malvidae View MSA
124063526 5270 Rosid View MSA
123741698 5271 Pentapetalae View MSA
122788923 5272 Eudicot View MSA
122042963 5273 Angiosperm View MSA
121350379 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain