Gene : Carub.0006s2102 C. rubella v1.1
Defline:  (1 of 2) K01899 - succinyl-CoA synthetase alpha subunit (LSC1) Genomic Order:  2102
Name:  ? Carub.0006s2102 Secondary Identifier:  ? PAC:39248884
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s2102 0.5kb upstream 0.5kb upstream 2737 true scaffold_6: 7869761-7872497 Capsella rubella
Carub.0006s2102 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 7869761-7870260 Capsella rubella
Carub.0006s2102 0.5kb downstream 0.5kb downstream 2737 true scaffold_6: 7870261-7872997 Capsella rubella
Carub.0006s2102 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 7872498-7872997 Capsella rubella
Carub.0006s2102 1.0kb upstream 1.0kb upstream 3237 true scaffold_6: 7869261-7872497 Capsella rubella
Carub.0006s2102 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 7869261-7870260 Capsella rubella
Carub.0006s2102 1.0kb downstream 1.0kb downstream 3237 true scaffold_6: 7870261-7873497 Capsella rubella
Carub.0006s2102 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 7872498-7873497 Capsella rubella
Carub.0006s2102 2.0kb upstream 2.0kb upstream 4237 true scaffold_6: 7868261-7872497 Capsella rubella
Carub.0006s2102 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 7868261-7870260 Capsella rubella
Carub.0006s2102 2.0kb downstream 2.0kb downstream 4237 true scaffold_6: 7870261-7874497 Capsella rubella
Carub.0006s2102 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 7872498-7874497 Capsella rubella
Carub.0006s2102 5.0kb upstream 5.0kb upstream 7237 true scaffold_6: 7865261-7872497 Capsella rubella
Carub.0006s2102 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 7865261-7870260 Capsella rubella
Carub.0006s2102 5.0kb downstream 5.0kb downstream 7237 true scaffold_6: 7870261-7877497 Capsella rubella
Carub.0006s2102 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 7872498-7877497 Capsella rubella
Carub.0006s2102 10.0kb upstream 10.0kb upstream 12237 true scaffold_6: 7860261-7872497 Capsella rubella
Carub.0006s2102 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 7860261-7870260 Capsella rubella
Carub.0006s2102 10.0kb downstream 10.0kb downstream 12237 true scaffold_6: 7870261-7882497 Capsella rubella
Carub.0006s2102 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 7872498-7882497 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377125 5261 Brassicaceae View MSA
123837758 5264 Brassicales-Malvales View MSA
124342253 5266 SBM View MSA
124250817 5268 Malvidae View MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain