Gene : Carub.0006s1802 C. rubella v1.1
Defline:  (1 of 1) PTHR11062//PTHR11062:SF84 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // EXOSTOSIN FAMILY PROTEIN Genomic Order:  1802
Name:  ? Carub.0006s1802 Secondary Identifier:  ? PAC:39248422
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5980 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s1802 0.5kb upstream 0.5kb upstream 3175 true scaffold_6: 6673604-6676778 Capsella rubella
Carub.0006s1802 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 6673604-6674103 Capsella rubella
Carub.0006s1802 0.5kb downstream 0.5kb downstream 3175 true scaffold_6: 6674104-6677278 Capsella rubella
Carub.0006s1802 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 6676779-6677278 Capsella rubella
Carub.0006s1802 1.0kb upstream 1.0kb upstream 3675 true scaffold_6: 6673104-6676778 Capsella rubella
Carub.0006s1802 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 6673104-6674103 Capsella rubella
Carub.0006s1802 1.0kb downstream 1.0kb downstream 3675 true scaffold_6: 6674104-6677778 Capsella rubella
Carub.0006s1802 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 6676779-6677778 Capsella rubella
Carub.0006s1802 2.0kb upstream 2.0kb upstream 4675 true scaffold_6: 6672104-6676778 Capsella rubella
Carub.0006s1802 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 6672104-6674103 Capsella rubella
Carub.0006s1802 2.0kb downstream 2.0kb downstream 4675 true scaffold_6: 6674104-6678778 Capsella rubella
Carub.0006s1802 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 6676779-6678778 Capsella rubella
Carub.0006s1802 5.0kb upstream 5.0kb upstream 7675 true scaffold_6: 6669104-6676778 Capsella rubella
Carub.0006s1802 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 6669104-6674103 Capsella rubella
Carub.0006s1802 5.0kb downstream 5.0kb downstream 7675 true scaffold_6: 6674104-6681778 Capsella rubella
Carub.0006s1802 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 6676779-6681778 Capsella rubella
Carub.0006s1802 10.0kb upstream 10.0kb upstream 12675 true scaffold_6: 6664104-6676778 Capsella rubella
Carub.0006s1802 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 6664104-6674103 Capsella rubella
Carub.0006s1802 10.0kb downstream 10.0kb downstream 12675 true scaffold_6: 6674104-6686778 Capsella rubella
Carub.0006s1802 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 6676779-6686778 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372980 5261 Brassicaceae View MSA
123835027 5264 Brassicales-Malvales View MSA
124345705 5266 SBM View MSA
124243747 5268 Malvidae View MSA
124063167 5270 Rosid View MSA
123741138 5271 Pentapetalae View MSA
122789943 5272 Eudicot View MSA
122046187 5273 Angiosperm View MSA
121349832 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain