Gene : Carub.0003s2728 C. rubella v1.1
Defline:  (1 of 1) PTHR34455//PTHR34455:SF1 - FAMILY NOT NAMED // EXPRESSED PROTEIN Genomic Order:  2728
Name:  ? Carub.0003s2728 Secondary Identifier:  ? PAC:39240748
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PHOTOALL-PWY Capsella rubella pathologic  
Crubella PWY-101 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2728 0.5kb upstream 0.5kb upstream 851 true scaffold_3: 10429337-10430187 Capsella rubella
Carub.0003s2728 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10429688-10430187 Capsella rubella
Carub.0003s2728 0.5kb downstream 0.5kb downstream 851 true scaffold_3: 10428837-10429687 Capsella rubella
Carub.0003s2728 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10428837-10429336 Capsella rubella
Carub.0003s2728 1.0kb upstream 1.0kb upstream 1351 true scaffold_3: 10429337-10430687 Capsella rubella
Carub.0003s2728 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10429688-10430687 Capsella rubella
Carub.0003s2728 1.0kb downstream 1.0kb downstream 1351 true scaffold_3: 10428337-10429687 Capsella rubella
Carub.0003s2728 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10428337-10429336 Capsella rubella
Carub.0003s2728 2.0kb upstream 2.0kb upstream 2351 true scaffold_3: 10429337-10431687 Capsella rubella
Carub.0003s2728 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10429688-10431687 Capsella rubella
Carub.0003s2728 2.0kb downstream 2.0kb downstream 2351 true scaffold_3: 10427337-10429687 Capsella rubella
Carub.0003s2728 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10427337-10429336 Capsella rubella
Carub.0003s2728 5.0kb upstream 5.0kb upstream 5351 true scaffold_3: 10429337-10434687 Capsella rubella
Carub.0003s2728 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10429688-10434687 Capsella rubella
Carub.0003s2728 5.0kb downstream 5.0kb downstream 5351 true scaffold_3: 10424337-10429687 Capsella rubella
Carub.0003s2728 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10424337-10429336 Capsella rubella
Carub.0003s2728 10.0kb upstream 10.0kb upstream 10351 true scaffold_3: 10429337-10439687 Capsella rubella
Carub.0003s2728 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10429688-10439687 Capsella rubella
Carub.0003s2728 10.0kb downstream 10.0kb downstream 10351 true scaffold_3: 10419337-10429687 Capsella rubella
Carub.0003s2728 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10419337-10429336 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370651 5261 Brassicaceae View MSA
123839864 5264 Brassicales-Malvales View MSA
124349923 5266 SBM View MSA
124245307 5268 Malvidae View MSA
124072175 5270 Rosid View MSA
123739685 5271 Pentapetalae View MSA
122793757 5272 Eudicot View MSA
122041544 5273 Angiosperm View MSA
121346235 5274 Embryophyte View MSA
123428099 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain