Gene : Carub.0003s2739 C. rubella v1.1
Defline:  (1 of 1) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Genomic Order:  2739
Name:  ? Carub.0003s2739 Secondary Identifier:  ? PAC:39241271
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-2541 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2739 0.5kb upstream 0.5kb upstream 5747 true scaffold_3: 10542001-10547747 Capsella rubella
Carub.0003s2739 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10542001-10542500 Capsella rubella
Carub.0003s2739 0.5kb downstream 0.5kb downstream 5747 true scaffold_3: 10542501-10548247 Capsella rubella
Carub.0003s2739 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10547748-10548247 Capsella rubella
Carub.0003s2739 1.0kb upstream 1.0kb upstream 6247 true scaffold_3: 10541501-10547747 Capsella rubella
Carub.0003s2739 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10541501-10542500 Capsella rubella
Carub.0003s2739 1.0kb downstream 1.0kb downstream 6247 true scaffold_3: 10542501-10548747 Capsella rubella
Carub.0003s2739 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10547748-10548747 Capsella rubella
Carub.0003s2739 2.0kb upstream 2.0kb upstream 7247 true scaffold_3: 10540501-10547747 Capsella rubella
Carub.0003s2739 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10540501-10542500 Capsella rubella
Carub.0003s2739 2.0kb downstream 2.0kb downstream 7247 true scaffold_3: 10542501-10549747 Capsella rubella
Carub.0003s2739 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10547748-10549747 Capsella rubella
Carub.0003s2739 5.0kb upstream 5.0kb upstream 10247 true scaffold_3: 10537501-10547747 Capsella rubella
Carub.0003s2739 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10537501-10542500 Capsella rubella
Carub.0003s2739 5.0kb downstream 5.0kb downstream 10247 true scaffold_3: 10542501-10552747 Capsella rubella
Carub.0003s2739 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10547748-10552747 Capsella rubella
Carub.0003s2739 10.0kb upstream 10.0kb upstream 15247 true scaffold_3: 10532501-10547747 Capsella rubella
Carub.0003s2739 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10532501-10542500 Capsella rubella
Carub.0003s2739 10.0kb downstream 10.0kb downstream 15247 true scaffold_3: 10542501-10557747 Capsella rubella
Carub.0003s2739 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10547748-10557747 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362995 5261 Brassicaceae View MSA
123832061 5264 Brassicales-Malvales View MSA
124341862 5266 SBM View MSA
124253779 5268 Malvidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain