Gene : Carub.0003s2121 C. rubella v1.1
Defline:  (1 of 3) 6.2.1.12//6.2.1.34 - 4-coumarate--CoA ligase / 4-coumaryl-CoA synthetase // Trans-feruloyl-CoA synthase / Trans-feruloyl-CoA synthetase Genomic Order:  2121
Name:  ? Carub.0003s2121 Secondary Identifier:  ? PAC:39241100
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1121 Capsella rubella pathologic  
Crubella PWY1F-FLAVSYN Capsella rubella pathologic  
Crubella PWY-361 Capsella rubella pathologic  
Crubella PWY-6435 Capsella rubella pathologic  
Crubella PWY-6673 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2121 0.5kb upstream 0.5kb upstream 4442 true scaffold_3: 7646429-7650870 Capsella rubella
Carub.0003s2121 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7650371-7650870 Capsella rubella
Carub.0003s2121 0.5kb downstream 0.5kb downstream 4442 true scaffold_3: 7645929-7650370 Capsella rubella
Carub.0003s2121 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7645929-7646428 Capsella rubella
Carub.0003s2121 1.0kb upstream 1.0kb upstream 4942 true scaffold_3: 7646429-7651370 Capsella rubella
Carub.0003s2121 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7650371-7651370 Capsella rubella
Carub.0003s2121 1.0kb downstream 1.0kb downstream 4942 true scaffold_3: 7645429-7650370 Capsella rubella
Carub.0003s2121 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7645429-7646428 Capsella rubella
Carub.0003s2121 2.0kb upstream 2.0kb upstream 5942 true scaffold_3: 7646429-7652370 Capsella rubella
Carub.0003s2121 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7650371-7652370 Capsella rubella
Carub.0003s2121 2.0kb downstream 2.0kb downstream 5942 true scaffold_3: 7644429-7650370 Capsella rubella
Carub.0003s2121 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7644429-7646428 Capsella rubella
Carub.0003s2121 5.0kb upstream 5.0kb upstream 8942 true scaffold_3: 7646429-7655370 Capsella rubella
Carub.0003s2121 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7650371-7655370 Capsella rubella
Carub.0003s2121 5.0kb downstream 5.0kb downstream 8942 true scaffold_3: 7641429-7650370 Capsella rubella
Carub.0003s2121 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7641429-7646428 Capsella rubella
Carub.0003s2121 10.0kb upstream 10.0kb upstream 13942 true scaffold_3: 7646429-7660370 Capsella rubella
Carub.0003s2121 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7650371-7660370 Capsella rubella
Carub.0003s2121 10.0kb downstream 10.0kb downstream 13942 true scaffold_3: 7636429-7650370 Capsella rubella
Carub.0003s2121 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7636429-7646428 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380546 5261 Brassicaceae View MSA
123832271 5264 Brassicales-Malvales View MSA
124344401 5266 SBM View MSA
124253701 5268 Malvidae View MSA
124064969 5270 Rosid View MSA
123741286 5271 Pentapetalae View MSA
122790673 5272 Eudicot View MSA
122048251 5273 Angiosperm View MSA
121345883 5274 Embryophyte View MSA
123380283 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain