Gene : Carub.0003s2101 C. rubella v1.1
Defline:  (1 of 3) K01923 - phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) Genomic Order:  2101
Name:  ? Carub.0003s2101 Secondary Identifier:  ? PAC:39242913
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6124 Capsella rubella pathologic  
Crubella PWY-841 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2101 0.5kb upstream 0.5kb upstream 3067 true scaffold_3: 7573464-7576530 Capsella rubella
Carub.0003s2101 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7576031-7576530 Capsella rubella
Carub.0003s2101 0.5kb downstream 0.5kb downstream 3067 true scaffold_3: 7572964-7576030 Capsella rubella
Carub.0003s2101 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7572964-7573463 Capsella rubella
Carub.0003s2101 1.0kb upstream 1.0kb upstream 3567 true scaffold_3: 7573464-7577030 Capsella rubella
Carub.0003s2101 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7576031-7577030 Capsella rubella
Carub.0003s2101 1.0kb downstream 1.0kb downstream 3567 true scaffold_3: 7572464-7576030 Capsella rubella
Carub.0003s2101 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7572464-7573463 Capsella rubella
Carub.0003s2101 2.0kb upstream 2.0kb upstream 4567 true scaffold_3: 7573464-7578030 Capsella rubella
Carub.0003s2101 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7576031-7578030 Capsella rubella
Carub.0003s2101 2.0kb downstream 2.0kb downstream 4567 true scaffold_3: 7571464-7576030 Capsella rubella
Carub.0003s2101 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7571464-7573463 Capsella rubella
Carub.0003s2101 5.0kb upstream 5.0kb upstream 7567 true scaffold_3: 7573464-7581030 Capsella rubella
Carub.0003s2101 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7576031-7581030 Capsella rubella
Carub.0003s2101 5.0kb downstream 5.0kb downstream 7567 true scaffold_3: 7568464-7576030 Capsella rubella
Carub.0003s2101 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7568464-7573463 Capsella rubella
Carub.0003s2101 10.0kb upstream 10.0kb upstream 12567 true scaffold_3: 7573464-7586030 Capsella rubella
Carub.0003s2101 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7576031-7586030 Capsella rubella
Carub.0003s2101 10.0kb downstream 10.0kb downstream 12567 true scaffold_3: 7563464-7576030 Capsella rubella
Carub.0003s2101 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7563464-7573463 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381368 5261 Brassicaceae View MSA
123829780 5264 Brassicales-Malvales View MSA
124339930 5266 SBM View MSA
124242739 5268 Malvidae View MSA
124065715 5270 Rosid View MSA
123739359 5271 Pentapetalae View MSA
122791298 5272 Eudicot View MSA
122044442 5273 Angiosperm View MSA
121346335 5274 Embryophyte View MSA
123424061 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain