Gene : Carub.0003s1920 C. rubella v1.1
Defline:  (1 of 5) PTHR22849//PTHR22849:SF52 - WDSAM1 PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  1920
Name:  ? Carub.0003s1920 Secondary Identifier:  ? PAC:39242729
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1920 0.5kb upstream 0.5kb upstream 1778 true scaffold_3: 6875026-6876803 Capsella rubella
Carub.0003s1920 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 6876304-6876803 Capsella rubella
Carub.0003s1920 0.5kb downstream 0.5kb downstream 1778 true scaffold_3: 6874526-6876303 Capsella rubella
Carub.0003s1920 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 6874526-6875025 Capsella rubella
Carub.0003s1920 1.0kb upstream 1.0kb upstream 2278 true scaffold_3: 6875026-6877303 Capsella rubella
Carub.0003s1920 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 6876304-6877303 Capsella rubella
Carub.0003s1920 1.0kb downstream 1.0kb downstream 2278 true scaffold_3: 6874026-6876303 Capsella rubella
Carub.0003s1920 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 6874026-6875025 Capsella rubella
Carub.0003s1920 2.0kb upstream 2.0kb upstream 3278 true scaffold_3: 6875026-6878303 Capsella rubella
Carub.0003s1920 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 6876304-6878303 Capsella rubella
Carub.0003s1920 2.0kb downstream 2.0kb downstream 3278 true scaffold_3: 6873026-6876303 Capsella rubella
Carub.0003s1920 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6873026-6875025 Capsella rubella
Carub.0003s1920 5.0kb upstream 5.0kb upstream 6278 true scaffold_3: 6875026-6881303 Capsella rubella
Carub.0003s1920 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 6876304-6881303 Capsella rubella
Carub.0003s1920 5.0kb downstream 5.0kb downstream 6278 true scaffold_3: 6870026-6876303 Capsella rubella
Carub.0003s1920 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6870026-6875025 Capsella rubella
Carub.0003s1920 10.0kb upstream 10.0kb upstream 11278 true scaffold_3: 6875026-6886303 Capsella rubella
Carub.0003s1920 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 6876304-6886303 Capsella rubella
Carub.0003s1920 10.0kb downstream 10.0kb downstream 11278 true scaffold_3: 6865026-6876303 Capsella rubella
Carub.0003s1920 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6865026-6875025 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379153 5261 Brassicaceae View MSA
123802114 5264 Brassicales-Malvales View MSA
124299332 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain