Gene : Carub.0003s1622 C. rubella v1.1
Defline:  (1 of 2) K01412 - mitochondrial-processing peptidase subunit alpha [EC:3.4.24.64] (PMPCA, MAS2) Genomic Order:  1622
Name:  ? Carub.0003s1622 Secondary Identifier:  ? PAC:39240983
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-3781 Capsella rubella pathologic  
Crubella PWY-7279 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1622 0.5kb upstream 0.5kb upstream 3696 true scaffold_3: 5725216-5728911 Capsella rubella
Carub.0003s1622 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5725216-5725715 Capsella rubella
Carub.0003s1622 0.5kb downstream 0.5kb downstream 3696 true scaffold_3: 5725716-5729411 Capsella rubella
Carub.0003s1622 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5728912-5729411 Capsella rubella
Carub.0003s1622 1.0kb upstream 1.0kb upstream 4196 true scaffold_3: 5724716-5728911 Capsella rubella
Carub.0003s1622 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5724716-5725715 Capsella rubella
Carub.0003s1622 1.0kb downstream 1.0kb downstream 4196 true scaffold_3: 5725716-5729911 Capsella rubella
Carub.0003s1622 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5728912-5729911 Capsella rubella
Carub.0003s1622 2.0kb upstream 2.0kb upstream 5196 true scaffold_3: 5723716-5728911 Capsella rubella
Carub.0003s1622 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5723716-5725715 Capsella rubella
Carub.0003s1622 2.0kb downstream 2.0kb downstream 5196 true scaffold_3: 5725716-5730911 Capsella rubella
Carub.0003s1622 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5728912-5730911 Capsella rubella
Carub.0003s1622 5.0kb upstream 5.0kb upstream 8196 true scaffold_3: 5720716-5728911 Capsella rubella
Carub.0003s1622 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5720716-5725715 Capsella rubella
Carub.0003s1622 5.0kb downstream 5.0kb downstream 8196 true scaffold_3: 5725716-5733911 Capsella rubella
Carub.0003s1622 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5728912-5733911 Capsella rubella
Carub.0003s1622 10.0kb upstream 10.0kb upstream 13196 true scaffold_3: 5715716-5728911 Capsella rubella
Carub.0003s1622 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5715716-5725715 Capsella rubella
Carub.0003s1622 10.0kb downstream 10.0kb downstream 13196 true scaffold_3: 5725716-5738911 Capsella rubella
Carub.0003s1622 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5728912-5738911 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
122375459 5261 Brassicaceae View MSA
123837486 5264 Brassicales-Malvales View MSA
124346987 5266 SBM View MSA
124244870 5268 Malvidae View MSA
124064083 5270 Rosid View MSA
123738249 5271 Pentapetalae View MSA
122789346 5272 Eudicot View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain