Gene : Carub.0003s1680 C. rubella v1.1
Defline:  (1 of 101) 3.1.1.11 - Pectinesterase / Pectin methylesterase Genomic Order:  1680
Name:  ? Carub.0003s1680 Secondary Identifier:  ? PAC:39239834
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1680 0.5kb upstream 0.5kb upstream 2124 true scaffold_3: 5941809-5943932 Capsella rubella
Carub.0003s1680 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5943433-5943932 Capsella rubella
Carub.0003s1680 0.5kb downstream 0.5kb downstream 2124 true scaffold_3: 5941309-5943432 Capsella rubella
Carub.0003s1680 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5941309-5941808 Capsella rubella
Carub.0003s1680 1.0kb upstream 1.0kb upstream 2624 true scaffold_3: 5941809-5944432 Capsella rubella
Carub.0003s1680 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5943433-5944432 Capsella rubella
Carub.0003s1680 1.0kb downstream 1.0kb downstream 2624 true scaffold_3: 5940809-5943432 Capsella rubella
Carub.0003s1680 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5940809-5941808 Capsella rubella
Carub.0003s1680 2.0kb upstream 2.0kb upstream 3624 true scaffold_3: 5941809-5945432 Capsella rubella
Carub.0003s1680 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5943433-5945432 Capsella rubella
Carub.0003s1680 2.0kb downstream 2.0kb downstream 3624 true scaffold_3: 5939809-5943432 Capsella rubella
Carub.0003s1680 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5939809-5941808 Capsella rubella
Carub.0003s1680 5.0kb upstream 5.0kb upstream 6624 true scaffold_3: 5941809-5948432 Capsella rubella
Carub.0003s1680 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5943433-5948432 Capsella rubella
Carub.0003s1680 5.0kb downstream 5.0kb downstream 6624 true scaffold_3: 5936809-5943432 Capsella rubella
Carub.0003s1680 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5936809-5941808 Capsella rubella
Carub.0003s1680 10.0kb upstream 10.0kb upstream 11624 true scaffold_3: 5941809-5953432 Capsella rubella
Carub.0003s1680 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5943433-5953432 Capsella rubella
Carub.0003s1680 10.0kb downstream 10.0kb downstream 11624 true scaffold_3: 5931809-5943432 Capsella rubella
Carub.0003s1680 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5931809-5941808 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375609 5261 Brassicaceae View MSA
123834540 5264 Brassicales-Malvales View MSA
124336854 5266 SBM View MSA
124244536 5268 Malvidae View MSA
124061057 5270 Rosid View MSA
123736756 5271 Pentapetalae View MSA
122769877 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain