Gene : Carub.0003s3481 C. rubella v1.1
Defline:  (1 of 1) K01900 - succinyl-CoA synthetase beta subunit (LSC2) Genomic Order:  3481
Name:  ? Carub.0003s3481 Secondary Identifier:  ? PAC:39241862
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5464 Capsella rubella pathologic  
Crubella PWY-5690 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s3481 0.5kb upstream 0.5kb upstream 3004 true scaffold_3: 14789347-14792350 Capsella rubella
Carub.0003s3481 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 14789347-14789846 Capsella rubella
Carub.0003s3481 0.5kb downstream 0.5kb downstream 3004 true scaffold_3: 14789847-14792850 Capsella rubella
Carub.0003s3481 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 14792351-14792850 Capsella rubella
Carub.0003s3481 1.0kb upstream 1.0kb upstream 3504 true scaffold_3: 14788847-14792350 Capsella rubella
Carub.0003s3481 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 14788847-14789846 Capsella rubella
Carub.0003s3481 1.0kb downstream 1.0kb downstream 3504 true scaffold_3: 14789847-14793350 Capsella rubella
Carub.0003s3481 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 14792351-14793350 Capsella rubella
Carub.0003s3481 2.0kb upstream 2.0kb upstream 4504 true scaffold_3: 14787847-14792350 Capsella rubella
Carub.0003s3481 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 14787847-14789846 Capsella rubella
Carub.0003s3481 2.0kb downstream 2.0kb downstream 4504 true scaffold_3: 14789847-14794350 Capsella rubella
Carub.0003s3481 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 14792351-14794350 Capsella rubella
Carub.0003s3481 5.0kb upstream 5.0kb upstream 7504 true scaffold_3: 14784847-14792350 Capsella rubella
Carub.0003s3481 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 14784847-14789846 Capsella rubella
Carub.0003s3481 5.0kb downstream 5.0kb downstream 7504 true scaffold_3: 14789847-14797350 Capsella rubella
Carub.0003s3481 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 14792351-14797350 Capsella rubella
Carub.0003s3481 10.0kb upstream 10.0kb upstream 12504 true scaffold_3: 14779847-14792350 Capsella rubella
Carub.0003s3481 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 14779847-14789846 Capsella rubella
Carub.0003s3481 10.0kb downstream 10.0kb downstream 12504 true scaffold_3: 14789847-14802350 Capsella rubella
Carub.0003s3481 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 14792351-14802350 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368823 5261 Brassicaceae View MSA
123831519 5264 Brassicales-Malvales View MSA
124339342 5266 SBM View MSA
124251399 5268 Malvidae View MSA
124060872 5270 Rosid View MSA
123742087 5271 Pentapetalae View MSA
122792279 5272 Eudicot View MSA
122051444 5273 Angiosperm View MSA
121345383 5274 Embryophyte View MSA
123424499 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain