Gene : Carub.0003s2617 C. rubella v1.1
Defline:  (1 of 1) PTHR11712//PTHR11712:SF275 - POLYKETIDE SYNTHASE-RELATED // 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE, MITOCHONDRIAL Genomic Order:  2617
Name:  ? Carub.0003s2617 Secondary Identifier:  ? PAC:39242662
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella FASYN-ELONG-PWY Capsella rubella pathologic  
Crubella PWY-5156 Capsella rubella pathologic  
Crubella PWY-5971 Capsella rubella pathologic  
Crubella PWY-5989 Capsella rubella pathologic  
Crubella PWY-6282 Capsella rubella pathologic  
Crubella PWY-7388 Capsella rubella pathologic  
Crubella PWY-7663 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s2617 0.5kb upstream 0.5kb upstream 3622 true scaffold_3: 9789023-9792644 Capsella rubella
Carub.0003s2617 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9792145-9792644 Capsella rubella
Carub.0003s2617 0.5kb downstream 0.5kb downstream 3622 true scaffold_3: 9788523-9792144 Capsella rubella
Carub.0003s2617 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9788523-9789022 Capsella rubella
Carub.0003s2617 1.0kb upstream 1.0kb upstream 4122 true scaffold_3: 9789023-9793144 Capsella rubella
Carub.0003s2617 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9792145-9793144 Capsella rubella
Carub.0003s2617 1.0kb downstream 1.0kb downstream 4122 true scaffold_3: 9788023-9792144 Capsella rubella
Carub.0003s2617 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9788023-9789022 Capsella rubella
Carub.0003s2617 2.0kb upstream 2.0kb upstream 5122 true scaffold_3: 9789023-9794144 Capsella rubella
Carub.0003s2617 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9792145-9794144 Capsella rubella
Carub.0003s2617 2.0kb downstream 2.0kb downstream 5122 true scaffold_3: 9787023-9792144 Capsella rubella
Carub.0003s2617 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9787023-9789022 Capsella rubella
Carub.0003s2617 5.0kb upstream 5.0kb upstream 8122 true scaffold_3: 9789023-9797144 Capsella rubella
Carub.0003s2617 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9792145-9797144 Capsella rubella
Carub.0003s2617 5.0kb downstream 5.0kb downstream 8122 true scaffold_3: 9784023-9792144 Capsella rubella
Carub.0003s2617 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9784023-9789022 Capsella rubella
Carub.0003s2617 10.0kb upstream 10.0kb upstream 13122 true scaffold_3: 9789023-9802144 Capsella rubella
Carub.0003s2617 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9792145-9802144 Capsella rubella
Carub.0003s2617 10.0kb downstream 10.0kb downstream 13122 true scaffold_3: 9779023-9792144 Capsella rubella
Carub.0003s2617 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9779023-9789022 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371309 5261 Brassicaceae View MSA
123829991 5264 Brassicales-Malvales View MSA
124344955 5266 SBM View MSA
124240268 5268 Malvidae View MSA
124060523 5270 Rosid View MSA
123738041 5271 Pentapetalae View MSA
122786623 5272 Eudicot View MSA
122051170 5273 Angiosperm View MSA
121345587 5274 Embryophyte View MSA
123424058 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain