Gene : Carub.0003s0436 C. rubella v1.1
Defline:  (1 of 1) PTHR23024:SF227 - GIBBERELLIN RECEPTOR GID1A-RELATED Genomic Order:  436
Name:  ? Carub.0003s0436 Secondary Identifier:  ? PAC:39241786
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6303 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0436 0.5kb upstream 0.5kb upstream 2728 true scaffold_3: 1468280-1471007 Capsella rubella
Carub.0003s0436 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1468280-1468779 Capsella rubella
Carub.0003s0436 0.5kb downstream 0.5kb downstream 2728 true scaffold_3: 1468780-1471507 Capsella rubella
Carub.0003s0436 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1471008-1471507 Capsella rubella
Carub.0003s0436 1.0kb upstream 1.0kb upstream 3228 true scaffold_3: 1467780-1471007 Capsella rubella
Carub.0003s0436 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1467780-1468779 Capsella rubella
Carub.0003s0436 1.0kb downstream 1.0kb downstream 3228 true scaffold_3: 1468780-1472007 Capsella rubella
Carub.0003s0436 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1471008-1472007 Capsella rubella
Carub.0003s0436 2.0kb upstream 2.0kb upstream 4228 true scaffold_3: 1466780-1471007 Capsella rubella
Carub.0003s0436 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1466780-1468779 Capsella rubella
Carub.0003s0436 2.0kb downstream 2.0kb downstream 4228 true scaffold_3: 1468780-1473007 Capsella rubella
Carub.0003s0436 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1471008-1473007 Capsella rubella
Carub.0003s0436 5.0kb upstream 5.0kb upstream 7228 true scaffold_3: 1463780-1471007 Capsella rubella
Carub.0003s0436 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1463780-1468779 Capsella rubella
Carub.0003s0436 5.0kb downstream 5.0kb downstream 7228 true scaffold_3: 1468780-1476007 Capsella rubella
Carub.0003s0436 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1471008-1476007 Capsella rubella
Carub.0003s0436 10.0kb upstream 10.0kb upstream 12228 true scaffold_3: 1458780-1471007 Capsella rubella
Carub.0003s0436 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1458780-1468779 Capsella rubella
Carub.0003s0436 10.0kb downstream 10.0kb downstream 12228 true scaffold_3: 1468780-1481007 Capsella rubella
Carub.0003s0436 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1471008-1481007 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374731 5261 Brassicaceae View MSA
123837846 5264 Brassicales-Malvales View MSA
124344141 5266 SBM View MSA
124250011 5268 Malvidae View MSA
124068362 5270 Rosid View MSA
123741426 5271 Pentapetalae View MSA
122795616 5272 Eudicot View MSA
122044098 5273 Angiosperm View MSA
123428915 5275 Viridiplantae View MSA
121350684 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain