Gene : Carub.0003s0154 C. rubella v1.1
Defline:  (1 of 1) PTHR23076//PTHR23076:SF61 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED Genomic Order:  154
Name:  ? Carub.0003s0154 Secondary Identifier:  ? PAC:39241973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0154 0.5kb upstream 0.5kb upstream 3090 true scaffold_3: 516693-519782 Capsella rubella
Carub.0003s0154 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 519283-519782 Capsella rubella
Carub.0003s0154 0.5kb downstream 0.5kb downstream 3090 true scaffold_3: 516193-519282 Capsella rubella
Carub.0003s0154 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 516193-516692 Capsella rubella
Carub.0003s0154 1.0kb upstream 1.0kb upstream 3590 true scaffold_3: 516693-520282 Capsella rubella
Carub.0003s0154 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 519283-520282 Capsella rubella
Carub.0003s0154 1.0kb downstream 1.0kb downstream 3590 true scaffold_3: 515693-519282 Capsella rubella
Carub.0003s0154 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 515693-516692 Capsella rubella
Carub.0003s0154 2.0kb upstream 2.0kb upstream 4590 true scaffold_3: 516693-521282 Capsella rubella
Carub.0003s0154 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 519283-521282 Capsella rubella
Carub.0003s0154 2.0kb downstream 2.0kb downstream 4590 true scaffold_3: 514693-519282 Capsella rubella
Carub.0003s0154 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 514693-516692 Capsella rubella
Carub.0003s0154 5.0kb upstream 5.0kb upstream 7590 true scaffold_3: 516693-524282 Capsella rubella
Carub.0003s0154 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 519283-524282 Capsella rubella
Carub.0003s0154 5.0kb downstream 5.0kb downstream 7590 true scaffold_3: 511693-519282 Capsella rubella
Carub.0003s0154 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 511693-516692 Capsella rubella
Carub.0003s0154 10.0kb upstream 10.0kb upstream 12590 true scaffold_3: 516693-529282 Capsella rubella
Carub.0003s0154 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 519283-529282 Capsella rubella
Carub.0003s0154 10.0kb downstream 10.0kb downstream 12590 true scaffold_3: 506693-519282 Capsella rubella
Carub.0003s0154 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 506693-516692 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374526 5261 Brassicaceae View MSA
123833996 5264 Brassicales-Malvales View MSA
124339955 5266 SBM View MSA
124238677 5268 Malvidae View MSA
124063018 5270 Rosid View MSA
123737747 5271 Pentapetalae View MSA
122793170 5272 Eudicot View MSA
122045675 5273 Angiosperm View MSA
123428918 5275 Viridiplantae View MSA
121344954 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain