Gene : Carub.0003s0174 C. rubella v1.1
Defline:  (1 of 2) PTHR31155:SF4 - ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE 1, CHLOROPLASTIC-RELATED Genomic Order:  174
Name:  ? Carub.0003s0174 Secondary Identifier:  ? PAC:39240035
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-5147 Capsella rubella pathologic  
Crubella PWY-5156 Capsella rubella pathologic  
Crubella PWY-5366 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0174 0.5kb upstream 0.5kb upstream 2930 true scaffold_3: 569637-572566 Capsella rubella
Carub.0003s0174 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 569637-570136 Capsella rubella
Carub.0003s0174 0.5kb downstream 0.5kb downstream 2930 true scaffold_3: 570137-573066 Capsella rubella
Carub.0003s0174 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 572567-573066 Capsella rubella
Carub.0003s0174 1.0kb upstream 1.0kb upstream 3430 true scaffold_3: 569137-572566 Capsella rubella
Carub.0003s0174 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 569137-570136 Capsella rubella
Carub.0003s0174 1.0kb downstream 1.0kb downstream 3430 true scaffold_3: 570137-573566 Capsella rubella
Carub.0003s0174 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 572567-573566 Capsella rubella
Carub.0003s0174 2.0kb upstream 2.0kb upstream 4430 true scaffold_3: 568137-572566 Capsella rubella
Carub.0003s0174 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 568137-570136 Capsella rubella
Carub.0003s0174 2.0kb downstream 2.0kb downstream 4430 true scaffold_3: 570137-574566 Capsella rubella
Carub.0003s0174 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 572567-574566 Capsella rubella
Carub.0003s0174 5.0kb upstream 5.0kb upstream 7430 true scaffold_3: 565137-572566 Capsella rubella
Carub.0003s0174 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 565137-570136 Capsella rubella
Carub.0003s0174 5.0kb downstream 5.0kb downstream 7430 true scaffold_3: 570137-577566 Capsella rubella
Carub.0003s0174 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 572567-577566 Capsella rubella
Carub.0003s0174 10.0kb upstream 10.0kb upstream 12430 true scaffold_3: 560137-572566 Capsella rubella
Carub.0003s0174 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 560137-570136 Capsella rubella
Carub.0003s0174 10.0kb downstream 10.0kb downstream 12430 true scaffold_3: 570137-582566 Capsella rubella
Carub.0003s0174 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 572567-582566 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362645 5261 Brassicaceae View MSA
123829168 5264 Brassicales-Malvales View MSA
124350159 5266 SBM View MSA
124243967 5268 Malvidae View MSA
124069229 5270 Rosid View MSA
123745832 5271 Pentapetalae View MSA
122789548 5272 Eudicot View MSA
122047247 5273 Angiosperm View MSA
121347152 5274 Embryophyte View MSA
123428838 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain