Gene : Carub.0003s1498 C. rubella v1.1
Defline:  (1 of 4) PTHR32219:SF2 - PROTON PUMP-INTERACTOR 1-RELATED Genomic Order:  1498
Name:  ? Carub.0003s1498 Secondary Identifier:  ? PAC:39241774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1498 0.5kb upstream 0.5kb upstream 2602 true scaffold_3: 5268081-5270682 Capsella rubella
Carub.0003s1498 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5270183-5270682 Capsella rubella
Carub.0003s1498 0.5kb downstream 0.5kb downstream 2602 true scaffold_3: 5267581-5270182 Capsella rubella
Carub.0003s1498 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5267581-5268080 Capsella rubella
Carub.0003s1498 1.0kb upstream 1.0kb upstream 3102 true scaffold_3: 5268081-5271182 Capsella rubella
Carub.0003s1498 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5270183-5271182 Capsella rubella
Carub.0003s1498 1.0kb downstream 1.0kb downstream 3102 true scaffold_3: 5267081-5270182 Capsella rubella
Carub.0003s1498 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5267081-5268080 Capsella rubella
Carub.0003s1498 2.0kb upstream 2.0kb upstream 4102 true scaffold_3: 5268081-5272182 Capsella rubella
Carub.0003s1498 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5270183-5272182 Capsella rubella
Carub.0003s1498 2.0kb downstream 2.0kb downstream 4102 true scaffold_3: 5266081-5270182 Capsella rubella
Carub.0003s1498 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5266081-5268080 Capsella rubella
Carub.0003s1498 5.0kb upstream 5.0kb upstream 7102 true scaffold_3: 5268081-5275182 Capsella rubella
Carub.0003s1498 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5270183-5275182 Capsella rubella
Carub.0003s1498 5.0kb downstream 5.0kb downstream 7102 true scaffold_3: 5263081-5270182 Capsella rubella
Carub.0003s1498 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5263081-5268080 Capsella rubella
Carub.0003s1498 10.0kb upstream 10.0kb upstream 12102 true scaffold_3: 5268081-5280182 Capsella rubella
Carub.0003s1498 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5270183-5280182 Capsella rubella
Carub.0003s1498 10.0kb downstream 10.0kb downstream 12102 true scaffold_3: 5258081-5270182 Capsella rubella
Carub.0003s1498 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5258081-5268080 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029387 5273 Angiosperm View MSA
122336165 5261 Brassicaceae Singleton cluster - no MSA
123843004 5264 Brassicales-Malvales View MSA
124323926 5266 SBM View MSA
124169683 5268 Malvidae View MSA
124051424 5270 Rosid View MSA
123620155 5271 Pentapetalae View MSA
122654571 5272 Eudicot View MSA
121298725 5274 Embryophyte View MSA
123336676 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain