Gene : Carub.0003s1394 C. rubella v1.1
Defline:  (1 of 4) K11975 - E3 ubiquitin-protein ligase RNF144 [EC:6.3.2.19] (RNF144) Genomic Order:  1394
Name:  ? Carub.0003s1394 Secondary Identifier:  ? PAC:39242130
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1394 0.5kb upstream 0.5kb upstream 1589 true scaffold_3: 4866400-4867988 Capsella rubella
Carub.0003s1394 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4867489-4867988 Capsella rubella
Carub.0003s1394 0.5kb downstream 0.5kb downstream 1589 true scaffold_3: 4865900-4867488 Capsella rubella
Carub.0003s1394 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4865900-4866399 Capsella rubella
Carub.0003s1394 1.0kb upstream 1.0kb upstream 2089 true scaffold_3: 4866400-4868488 Capsella rubella
Carub.0003s1394 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4867489-4868488 Capsella rubella
Carub.0003s1394 1.0kb downstream 1.0kb downstream 2089 true scaffold_3: 4865400-4867488 Capsella rubella
Carub.0003s1394 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4865400-4866399 Capsella rubella
Carub.0003s1394 2.0kb upstream 2.0kb upstream 3089 true scaffold_3: 4866400-4869488 Capsella rubella
Carub.0003s1394 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4867489-4869488 Capsella rubella
Carub.0003s1394 2.0kb downstream 2.0kb downstream 3089 true scaffold_3: 4864400-4867488 Capsella rubella
Carub.0003s1394 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4864400-4866399 Capsella rubella
Carub.0003s1394 5.0kb upstream 5.0kb upstream 6089 true scaffold_3: 4866400-4872488 Capsella rubella
Carub.0003s1394 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4867489-4872488 Capsella rubella
Carub.0003s1394 5.0kb downstream 5.0kb downstream 6089 true scaffold_3: 4861400-4867488 Capsella rubella
Carub.0003s1394 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4861400-4866399 Capsella rubella
Carub.0003s1394 10.0kb upstream 10.0kb upstream 11089 true scaffold_3: 4866400-4877488 Capsella rubella
Carub.0003s1394 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4867489-4877488 Capsella rubella
Carub.0003s1394 10.0kb downstream 10.0kb downstream 11089 true scaffold_3: 4856400-4867488 Capsella rubella
Carub.0003s1394 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4856400-4866399 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366475 5261 Brassicaceae View MSA
123834431 5264 Brassicales-Malvales View MSA
124342738 5266 SBM View MSA
124252111 5268 Malvidae View MSA
124068077 5270 Rosid View MSA
123752192 5271 Pentapetalae View MSA
122796967 5272 Eudicot View MSA
122046828 5273 Angiosperm View MSA
123429065 5275 Viridiplantae View MSA
121348618 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain