Gene : Carub.0003s1445 C. rubella v1.1
Defline:  (1 of 3) PTHR12741:SF22 - CALLOSE SYNTHASE 8-RELATED Genomic Order:  1445
Name:  ? Carub.0003s1445 Secondary Identifier:  ? PAC:39241396
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-6773 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1445 0.5kb upstream 0.5kb upstream 2169 true scaffold_3: 5068658-5070826 Capsella rubella
Carub.0003s1445 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5070327-5070826 Capsella rubella
Carub.0003s1445 0.5kb downstream 0.5kb downstream 2169 true scaffold_3: 5068158-5070326 Capsella rubella
Carub.0003s1445 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5068158-5068657 Capsella rubella
Carub.0003s1445 1.0kb upstream 1.0kb upstream 2669 true scaffold_3: 5068658-5071326 Capsella rubella
Carub.0003s1445 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5070327-5071326 Capsella rubella
Carub.0003s1445 1.0kb downstream 1.0kb downstream 2669 true scaffold_3: 5067658-5070326 Capsella rubella
Carub.0003s1445 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5067658-5068657 Capsella rubella
Carub.0003s1445 2.0kb upstream 2.0kb upstream 3669 true scaffold_3: 5068658-5072326 Capsella rubella
Carub.0003s1445 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5070327-5072326 Capsella rubella
Carub.0003s1445 2.0kb downstream 2.0kb downstream 3669 true scaffold_3: 5066658-5070326 Capsella rubella
Carub.0003s1445 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5066658-5068657 Capsella rubella
Carub.0003s1445 5.0kb upstream 5.0kb upstream 6669 true scaffold_3: 5068658-5075326 Capsella rubella
Carub.0003s1445 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5070327-5075326 Capsella rubella
Carub.0003s1445 5.0kb downstream 5.0kb downstream 6669 true scaffold_3: 5063658-5070326 Capsella rubella
Carub.0003s1445 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5063658-5068657 Capsella rubella
Carub.0003s1445 10.0kb upstream 10.0kb upstream 11669 true scaffold_3: 5068658-5080326 Capsella rubella
Carub.0003s1445 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5070327-5080326 Capsella rubella
Carub.0003s1445 10.0kb downstream 10.0kb downstream 11669 true scaffold_3: 5058658-5070326 Capsella rubella
Carub.0003s1445 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5058658-5068657 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338301 5261 Brassicaceae View MSA
123778893 5264 Brassicales-Malvales View MSA
124277229 5266 SBM View MSA
124249869 5268 Malvidae View MSA
123952435 5270 Rosid View MSA
123530225 5271 Pentapetalae View MSA
122565195 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain