Gene : Carub.0003s0988 C. rubella v1.1
Defline:  (1 of 4) KOG0845 - Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) Genomic Order:  988
Name:  ? Carub.0003s0988 Secondary Identifier:  ? PAC:39240678
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s0988 0.5kb upstream 0.5kb upstream 6299 true scaffold_3: 3387274-3393572 Capsella rubella
Carub.0003s0988 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3393073-3393572 Capsella rubella
Carub.0003s0988 0.5kb downstream 0.5kb downstream 6299 true scaffold_3: 3386774-3393072 Capsella rubella
Carub.0003s0988 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3386774-3387273 Capsella rubella
Carub.0003s0988 1.0kb upstream 1.0kb upstream 6799 true scaffold_3: 3387274-3394072 Capsella rubella
Carub.0003s0988 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3393073-3394072 Capsella rubella
Carub.0003s0988 1.0kb downstream 1.0kb downstream 6799 true scaffold_3: 3386274-3393072 Capsella rubella
Carub.0003s0988 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3386274-3387273 Capsella rubella
Carub.0003s0988 2.0kb upstream 2.0kb upstream 7799 true scaffold_3: 3387274-3395072 Capsella rubella
Carub.0003s0988 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3393073-3395072 Capsella rubella
Carub.0003s0988 2.0kb downstream 2.0kb downstream 7799 true scaffold_3: 3385274-3393072 Capsella rubella
Carub.0003s0988 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3385274-3387273 Capsella rubella
Carub.0003s0988 5.0kb upstream 5.0kb upstream 10799 true scaffold_3: 3387274-3398072 Capsella rubella
Carub.0003s0988 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3393073-3398072 Capsella rubella
Carub.0003s0988 5.0kb downstream 5.0kb downstream 10799 true scaffold_3: 3382274-3393072 Capsella rubella
Carub.0003s0988 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3382274-3387273 Capsella rubella
Carub.0003s0988 10.0kb upstream 10.0kb upstream 15799 true scaffold_3: 3387274-3403072 Capsella rubella
Carub.0003s0988 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3393073-3403072 Capsella rubella
Carub.0003s0988 10.0kb downstream 10.0kb downstream 15799 true scaffold_3: 3377274-3393072 Capsella rubella
Carub.0003s0988 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3377274-3387273 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364498 5261 Brassicaceae View MSA
123827710 5264 Brassicales-Malvales View MSA
124351623 5266 SBM View MSA
124251221 5268 Malvidae View MSA
124068519 5270 Rosid View MSA
123739177 5271 Pentapetalae View MSA
122788918 5272 Eudicot View MSA
122044360 5273 Angiosperm View MSA
121349905 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain