Gene : Carub.0003s1006 C. rubella v1.1
Defline:  (1 of 2) PTHR15141//PTHR15141:SF40 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED Genomic Order:  1006
Name:  ? Carub.0003s1006 Secondary Identifier:  ? PAC:39240276
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1006 0.5kb upstream 0.5kb upstream 2854 true scaffold_3: 3449346-3452199 Capsella rubella
Carub.0003s1006 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3449346-3449845 Capsella rubella
Carub.0003s1006 0.5kb downstream 0.5kb downstream 2854 true scaffold_3: 3449846-3452699 Capsella rubella
Carub.0003s1006 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3452200-3452699 Capsella rubella
Carub.0003s1006 1.0kb upstream 1.0kb upstream 3354 true scaffold_3: 3448846-3452199 Capsella rubella
Carub.0003s1006 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3448846-3449845 Capsella rubella
Carub.0003s1006 1.0kb downstream 1.0kb downstream 3354 true scaffold_3: 3449846-3453199 Capsella rubella
Carub.0003s1006 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3452200-3453199 Capsella rubella
Carub.0003s1006 2.0kb upstream 2.0kb upstream 4354 true scaffold_3: 3447846-3452199 Capsella rubella
Carub.0003s1006 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3447846-3449845 Capsella rubella
Carub.0003s1006 2.0kb downstream 2.0kb downstream 4354 true scaffold_3: 3449846-3454199 Capsella rubella
Carub.0003s1006 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3452200-3454199 Capsella rubella
Carub.0003s1006 5.0kb upstream 5.0kb upstream 7354 true scaffold_3: 3444846-3452199 Capsella rubella
Carub.0003s1006 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3444846-3449845 Capsella rubella
Carub.0003s1006 5.0kb downstream 5.0kb downstream 7354 true scaffold_3: 3449846-3457199 Capsella rubella
Carub.0003s1006 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3452200-3457199 Capsella rubella
Carub.0003s1006 10.0kb upstream 10.0kb upstream 12354 true scaffold_3: 3439846-3452199 Capsella rubella
Carub.0003s1006 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3439846-3449845 Capsella rubella
Carub.0003s1006 10.0kb downstream 10.0kb downstream 12354 true scaffold_3: 3449846-3462199 Capsella rubella
Carub.0003s1006 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3452200-3462199 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361342 5261 Brassicaceae View MSA
123798140 5264 Brassicales-Malvales View MSA
124295815 5266 SBM View MSA
124148148 5268 Malvidae View MSA
123874204 5270 Rosid View MSA
123747167 5271 Pentapetalae View MSA
122796041 5272 Eudicot View MSA
122045393 5273 Angiosperm View MSA
121348214 5274 Embryophyte View MSA
123380774 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain