Gene : Carub.0003s1289 C. rubella v1.1
Defline:  (1 of 2) K03120 - transcription initiation factor TFIID TATA-box-binding protein (TBP, tbp) Genomic Order:  1289
Name:  ? Carub.0003s1289 Secondary Identifier:  ? PAC:39239334
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1289 0.5kb upstream 0.5kb upstream 2934 true scaffold_3: 4455908-4458841 Capsella rubella
Carub.0003s1289 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4455908-4456407 Capsella rubella
Carub.0003s1289 0.5kb downstream 0.5kb downstream 2934 true scaffold_3: 4456408-4459341 Capsella rubella
Carub.0003s1289 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4458842-4459341 Capsella rubella
Carub.0003s1289 1.0kb upstream 1.0kb upstream 3434 true scaffold_3: 4455408-4458841 Capsella rubella
Carub.0003s1289 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4455408-4456407 Capsella rubella
Carub.0003s1289 1.0kb downstream 1.0kb downstream 3434 true scaffold_3: 4456408-4459841 Capsella rubella
Carub.0003s1289 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4458842-4459841 Capsella rubella
Carub.0003s1289 2.0kb upstream 2.0kb upstream 4434 true scaffold_3: 4454408-4458841 Capsella rubella
Carub.0003s1289 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4454408-4456407 Capsella rubella
Carub.0003s1289 2.0kb downstream 2.0kb downstream 4434 true scaffold_3: 4456408-4460841 Capsella rubella
Carub.0003s1289 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4458842-4460841 Capsella rubella
Carub.0003s1289 5.0kb upstream 5.0kb upstream 7434 true scaffold_3: 4451408-4458841 Capsella rubella
Carub.0003s1289 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4451408-4456407 Capsella rubella
Carub.0003s1289 5.0kb downstream 5.0kb downstream 7434 true scaffold_3: 4456408-4463841 Capsella rubella
Carub.0003s1289 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4458842-4463841 Capsella rubella
Carub.0003s1289 10.0kb upstream 10.0kb upstream 12434 true scaffold_3: 4446408-4458841 Capsella rubella
Carub.0003s1289 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4446408-4456407 Capsella rubella
Carub.0003s1289 10.0kb downstream 10.0kb downstream 12434 true scaffold_3: 4456408-4468841 Capsella rubella
Carub.0003s1289 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4458842-4468841 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372618 5261 Brassicaceae View MSA
123839847 5264 Brassicales-Malvales View MSA
124341386 5266 SBM View MSA
124247778 5268 Malvidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain