Gene : Araha.0306s0007 A. halleri v1.1
Defline:  (1 of 3) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  7
Name:  ? Araha.0306s0007 Secondary Identifier:  ? PAC:28836733
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-7511 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.0306s0007 0.5kb upstream 0.5kb upstream 2987 true Scaffold306: 36553-39539 Arabidopsis halleri
Araha.0306s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold306: 39040-39539 Arabidopsis halleri
Araha.0306s0007 0.5kb downstream 0.5kb downstream 2987 true Scaffold306: 36053-39039 Arabidopsis halleri
Araha.0306s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold306: 36053-36552 Arabidopsis halleri
Araha.0306s0007 1.0kb upstream 1.0kb upstream 3487 true Scaffold306: 36553-40039 Arabidopsis halleri
Araha.0306s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold306: 39040-40039 Arabidopsis halleri
Araha.0306s0007 1.0kb downstream 1.0kb downstream 3487 true Scaffold306: 35553-39039 Arabidopsis halleri
Araha.0306s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold306: 35553-36552 Arabidopsis halleri
Araha.0306s0007 2.0kb upstream 2.0kb upstream 4487 true Scaffold306: 36553-41039 Arabidopsis halleri
Araha.0306s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold306: 39040-41039 Arabidopsis halleri
Araha.0306s0007 2.0kb downstream 2.0kb downstream 4487 true Scaffold306: 34553-39039 Arabidopsis halleri
Araha.0306s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold306: 34553-36552 Arabidopsis halleri
Araha.0306s0007 5.0kb upstream 5.0kb upstream 7487 true Scaffold306: 36553-44039 Arabidopsis halleri
Araha.0306s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold306: 39040-44039 Arabidopsis halleri
Araha.0306s0007 5.0kb downstream 5.0kb downstream 7487 true Scaffold306: 31553-39039 Arabidopsis halleri
Araha.0306s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold306: 31553-36552 Arabidopsis halleri
Araha.0306s0007 10.0kb upstream 10.0kb upstream 11878 true Scaffold306: 36553-48430 Arabidopsis halleri
Araha.0306s0007 10.0kb upstream 10.0kb upstream 9391 false Scaffold306: 39040-48430 Arabidopsis halleri
Araha.0306s0007 10.0kb downstream 10.0kb downstream 12487 true Scaffold306: 26553-39039 Arabidopsis halleri
Araha.0306s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold306: 26553-36552 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378877 5261 Brassicaceae View MSA
123835862 5264 Brassicales-Malvales View MSA
124340184 5266 SBM View MSA
124254333 5268 Malvidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain