Gene : Araha.0138s0028 A. halleri v1.1
Defline:  (1 of 1) PTHR12526:SF17 - STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  28
Name:  ? Araha.0138s0028 Secondary Identifier:  ? PAC:28837026
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri GLYCOGENSYNTH-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-622 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.0138s0028 0.5kb upstream 0.5kb upstream 4617 true Scaffold138: 139600-144216 Arabidopsis halleri
Araha.0138s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold138: 143717-144216 Arabidopsis halleri
Araha.0138s0028 0.5kb downstream 0.5kb downstream 4617 true Scaffold138: 139100-143716 Arabidopsis halleri
Araha.0138s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold138: 139100-139599 Arabidopsis halleri
Araha.0138s0028 1.0kb upstream 1.0kb upstream 5117 true Scaffold138: 139600-144716 Arabidopsis halleri
Araha.0138s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold138: 143717-144716 Arabidopsis halleri
Araha.0138s0028 1.0kb downstream 1.0kb downstream 5117 true Scaffold138: 138600-143716 Arabidopsis halleri
Araha.0138s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold138: 138600-139599 Arabidopsis halleri
Araha.0138s0028 2.0kb upstream 2.0kb upstream 6117 true Scaffold138: 139600-145716 Arabidopsis halleri
Araha.0138s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold138: 143717-145716 Arabidopsis halleri
Araha.0138s0028 2.0kb downstream 2.0kb downstream 6117 true Scaffold138: 137600-143716 Arabidopsis halleri
Araha.0138s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold138: 137600-139599 Arabidopsis halleri
Araha.0138s0028 5.0kb upstream 5.0kb upstream 9117 true Scaffold138: 139600-148716 Arabidopsis halleri
Araha.0138s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold138: 143717-148716 Arabidopsis halleri
Araha.0138s0028 5.0kb downstream 5.0kb downstream 9117 true Scaffold138: 134600-143716 Arabidopsis halleri
Araha.0138s0028 5.0kb downstream 5.0kb downstream 5000 false Scaffold138: 134600-139599 Arabidopsis halleri
Araha.0138s0028 10.0kb upstream 10.0kb upstream 14117 true Scaffold138: 139600-153716 Arabidopsis halleri
Araha.0138s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold138: 143717-153716 Arabidopsis halleri
Araha.0138s0028 10.0kb downstream 10.0kb downstream 14117 true Scaffold138: 129600-143716 Arabidopsis halleri
Araha.0138s0028 10.0kb downstream 10.0kb downstream 10000 false Scaffold138: 129600-139599 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371005 5261 Brassicaceae View MSA
123838245 5264 Brassicales-Malvales View MSA
124341785 5266 SBM View MSA
124239444 5268 Malvidae View MSA
124060940 5270 Rosid View MSA
123737274 5271 Pentapetalae View MSA
122791286 5272 Eudicot View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain