Gene : Araha.3597s0017 A. halleri v1.1
Defline:  (1 of 2) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  17
Name:  ? Araha.3597s0017 Secondary Identifier:  ? PAC:28843694
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis halleri pathologic  
Ahalleri LEUSYN-PWY Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.3597s0017 0.5kb upstream 0.5kb upstream 4497 true Scaffold3597: 64581-69077 Arabidopsis halleri
Araha.3597s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold3597: 64581-65080 Arabidopsis halleri
Araha.3597s0017 0.5kb downstream 0.5kb downstream 4497 true Scaffold3597: 65081-69577 Arabidopsis halleri
Araha.3597s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold3597: 69078-69577 Arabidopsis halleri
Araha.3597s0017 1.0kb upstream 1.0kb upstream 4997 true Scaffold3597: 64081-69077 Arabidopsis halleri
Araha.3597s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold3597: 64081-65080 Arabidopsis halleri
Araha.3597s0017 1.0kb downstream 1.0kb downstream 4997 true Scaffold3597: 65081-70077 Arabidopsis halleri
Araha.3597s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold3597: 69078-70077 Arabidopsis halleri
Araha.3597s0017 2.0kb upstream 2.0kb upstream 5997 true Scaffold3597: 63081-69077 Arabidopsis halleri
Araha.3597s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold3597: 63081-65080 Arabidopsis halleri
Araha.3597s0017 2.0kb downstream 2.0kb downstream 5997 true Scaffold3597: 65081-71077 Arabidopsis halleri
Araha.3597s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold3597: 69078-71077 Arabidopsis halleri
Araha.3597s0017 5.0kb upstream 5.0kb upstream 8997 true Scaffold3597: 60081-69077 Arabidopsis halleri
Araha.3597s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold3597: 60081-65080 Arabidopsis halleri
Araha.3597s0017 5.0kb downstream 5.0kb downstream 8997 true Scaffold3597: 65081-74077 Arabidopsis halleri
Araha.3597s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold3597: 69078-74077 Arabidopsis halleri
Araha.3597s0017 10.0kb upstream 10.0kb upstream 13997 true Scaffold3597: 55081-69077 Arabidopsis halleri
Araha.3597s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold3597: 55081-65080 Arabidopsis halleri
Araha.3597s0017 10.0kb downstream 10.0kb downstream 13997 true Scaffold3597: 65081-79077 Arabidopsis halleri
Araha.3597s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold3597: 69078-79077 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362049 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain