Gene : Araha.3948s0009 A. halleri v1.1
Defline:  (1 of 2) PTHR11405:SF37 - CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN, CHLOROPLASTIC Genomic Order:  9
Name:  ? Araha.3948s0009 Secondary Identifier:  ? PAC:28863595
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri ARGSYNBSUB-PWY Arabidopsis halleri pathologic  
Ahalleri ARGSYN-PWY Arabidopsis halleri pathologic  
Ahalleri CITRULBIO-PWY Arabidopsis halleri pathologic  
Ahalleri GLUTAMINDEG-PWY Arabidopsis halleri pathologic  
Ahalleri PWY0-162 Arabidopsis halleri pathologic  
Ahalleri PWY-4984 Arabidopsis halleri pathologic  
Ahalleri PWY-5686 Arabidopsis halleri pathologic  
Ahalleri PWY-7211 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.3948s0009 0.5kb upstream 0.5kb upstream 3065 true Scaffold3948: 25147-28211 Arabidopsis halleri
Araha.3948s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold3948: 25147-25646 Arabidopsis halleri
Araha.3948s0009 0.5kb downstream 0.5kb downstream 3065 true Scaffold3948: 25647-28711 Arabidopsis halleri
Araha.3948s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold3948: 28212-28711 Arabidopsis halleri
Araha.3948s0009 1.0kb upstream 1.0kb upstream 3565 true Scaffold3948: 24647-28211 Arabidopsis halleri
Araha.3948s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold3948: 24647-25646 Arabidopsis halleri
Araha.3948s0009 1.0kb downstream 1.0kb downstream 3565 true Scaffold3948: 25647-29211 Arabidopsis halleri
Araha.3948s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold3948: 28212-29211 Arabidopsis halleri
Araha.3948s0009 2.0kb upstream 2.0kb upstream 4565 true Scaffold3948: 23647-28211 Arabidopsis halleri
Araha.3948s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold3948: 23647-25646 Arabidopsis halleri
Araha.3948s0009 2.0kb downstream 2.0kb downstream 4058 true Scaffold3948: 25647-29704 Arabidopsis halleri
Araha.3948s0009 2.0kb downstream 2.0kb downstream 1493 false Scaffold3948: 28212-29704 Arabidopsis halleri
Araha.3948s0009 5.0kb upstream 5.0kb upstream 7565 true Scaffold3948: 20647-28211 Arabidopsis halleri
Araha.3948s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold3948: 20647-25646 Arabidopsis halleri
Araha.3948s0009 5.0kb downstream 5.0kb downstream 4058 true Scaffold3948: 25647-29704 Arabidopsis halleri
Araha.3948s0009 5.0kb downstream 5.0kb downstream 1493 false Scaffold3948: 28212-29704 Arabidopsis halleri
Araha.3948s0009 10.0kb upstream 10.0kb upstream 12565 true Scaffold3948: 15647-28211 Arabidopsis halleri
Araha.3948s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold3948: 15647-25646 Arabidopsis halleri
Araha.3948s0009 10.0kb downstream 10.0kb downstream 4058 true Scaffold3948: 25647-29704 Arabidopsis halleri
Araha.3948s0009 10.0kb downstream 10.0kb downstream 1493 false Scaffold3948: 28212-29704 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372919 5261 Brassicaceae View MSA
123839532 5264 Brassicales-Malvales View MSA
124338612 5266 SBM View MSA
124252256 5268 Malvidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain