Gene : Araha.5204s0003 A. halleri v1.1
Defline:  (1 of 3) PTHR23023:SF83 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA5-RELATED Genomic Order:  3
Name:  ? Araha.5204s0003 Secondary Identifier:  ? PAC:28860574
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWYDQC-4 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.5204s0003 0.5kb upstream 0.5kb upstream 2175 true Scaffold5204: 21568-23742 Arabidopsis halleri
Araha.5204s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold5204: 21568-22067 Arabidopsis halleri
Araha.5204s0003 0.5kb downstream 0.5kb downstream 2175 true Scaffold5204: 22068-24242 Arabidopsis halleri
Araha.5204s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold5204: 23743-24242 Arabidopsis halleri
Araha.5204s0003 1.0kb upstream 1.0kb upstream 2675 true Scaffold5204: 21068-23742 Arabidopsis halleri
Araha.5204s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold5204: 21068-22067 Arabidopsis halleri
Araha.5204s0003 1.0kb downstream 1.0kb downstream 2675 true Scaffold5204: 22068-24742 Arabidopsis halleri
Araha.5204s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold5204: 23743-24742 Arabidopsis halleri
Araha.5204s0003 2.0kb upstream 2.0kb upstream 3675 true Scaffold5204: 20068-23742 Arabidopsis halleri
Araha.5204s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold5204: 20068-22067 Arabidopsis halleri
Araha.5204s0003 2.0kb downstream 2.0kb downstream 3675 true Scaffold5204: 22068-25742 Arabidopsis halleri
Araha.5204s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold5204: 23743-25742 Arabidopsis halleri
Araha.5204s0003 5.0kb upstream 5.0kb upstream 6675 true Scaffold5204: 17068-23742 Arabidopsis halleri
Araha.5204s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold5204: 17068-22067 Arabidopsis halleri
Araha.5204s0003 5.0kb downstream 5.0kb downstream 6675 true Scaffold5204: 22068-28742 Arabidopsis halleri
Araha.5204s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold5204: 23743-28742 Arabidopsis halleri
Araha.5204s0003 10.0kb upstream 10.0kb upstream 11675 true Scaffold5204: 12068-23742 Arabidopsis halleri
Araha.5204s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold5204: 12068-22067 Arabidopsis halleri
Araha.5204s0003 10.0kb downstream 10.0kb downstream 11675 true Scaffold5204: 22068-33742 Arabidopsis halleri
Araha.5204s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold5204: 23743-33742 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121487865 5273 Angiosperm Singleton cluster - no MSA
122321597 5261 Brassicaceae Singleton cluster - no MSA
123763192 5264 Brassicales-Malvales Singleton cluster - no MSA
124261827 5266 SBM Singleton cluster - no MSA
124118446 5268 Malvidae Singleton cluster - no MSA
123847836 5270 Rosid Singleton cluster - no MSA
123434116 5271 Pentapetalae Singleton cluster - no MSA
122469736 5272 Eudicot Singleton cluster - no MSA
120761254 5274 Embryophyte Singleton cluster - no MSA
122803697 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain