Gene : Araha.11938s0002 A. halleri v1.1
Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  2
Name:  ? Araha.11938s0002 Secondary Identifier:  ? PAC:28857066
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-695 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.11938s0002 0.5kb upstream 0.5kb upstream 2051 true Scaffold11938: 14243-16293 Arabidopsis halleri
Araha.11938s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold11938: 14243-14742 Arabidopsis halleri
Araha.11938s0002 0.5kb downstream 0.5kb downstream 1570 true Scaffold11938: 14743-16312 Arabidopsis halleri
Araha.11938s0002 0.5kb downstream 0.5kb downstream 19 false Scaffold11938: 16294-16312 Arabidopsis halleri
Araha.11938s0002 1.0kb upstream 1.0kb upstream 2551 true Scaffold11938: 13743-16293 Arabidopsis halleri
Araha.11938s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold11938: 13743-14742 Arabidopsis halleri
Araha.11938s0002 1.0kb downstream 1.0kb downstream 1570 true Scaffold11938: 14743-16312 Arabidopsis halleri
Araha.11938s0002 1.0kb downstream 1.0kb downstream 19 false Scaffold11938: 16294-16312 Arabidopsis halleri
Araha.11938s0002 2.0kb upstream 2.0kb upstream 3551 true Scaffold11938: 12743-16293 Arabidopsis halleri
Araha.11938s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold11938: 12743-14742 Arabidopsis halleri
Araha.11938s0002 2.0kb downstream 2.0kb downstream 1570 true Scaffold11938: 14743-16312 Arabidopsis halleri
Araha.11938s0002 2.0kb downstream 2.0kb downstream 19 false Scaffold11938: 16294-16312 Arabidopsis halleri
Araha.11938s0002 5.0kb upstream 5.0kb upstream 6551 true Scaffold11938: 9743-16293 Arabidopsis halleri
Araha.11938s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold11938: 9743-14742 Arabidopsis halleri
Araha.11938s0002 5.0kb downstream 5.0kb downstream 1570 true Scaffold11938: 14743-16312 Arabidopsis halleri
Araha.11938s0002 5.0kb downstream 5.0kb downstream 19 false Scaffold11938: 16294-16312 Arabidopsis halleri
Araha.11938s0002 10.0kb upstream 10.0kb upstream 11551 true Scaffold11938: 4743-16293 Arabidopsis halleri
Araha.11938s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold11938: 4743-14742 Arabidopsis halleri
Araha.11938s0002 10.0kb downstream 10.0kb downstream 1570 true Scaffold11938: 14743-16312 Arabidopsis halleri
Araha.11938s0002 10.0kb downstream 10.0kb downstream 19 false Scaffold11938: 16294-16312 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372061 5261 Brassicaceae View MSA
123836894 5264 Brassicales-Malvales View MSA
124346886 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain