Gene : Araha.12231s0002 A. halleri v1.1
Defline:  (1 of 1) PTHR33970:SF1 - VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC Genomic Order:  2
Name:  ? Araha.12231s0002 Secondary Identifier:  ? PAC:28863089
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri CAROTENOID-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-5945 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.12231s0002 0.5kb upstream 0.5kb upstream 2929 true Scaffold12231: 3146-6074 Arabidopsis halleri
Araha.12231s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold12231: 3146-3645 Arabidopsis halleri
Araha.12231s0002 0.5kb downstream 0.5kb downstream 2929 true Scaffold12231: 3646-6574 Arabidopsis halleri
Araha.12231s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold12231: 6075-6574 Arabidopsis halleri
Araha.12231s0002 1.0kb upstream 1.0kb upstream 3429 true Scaffold12231: 2646-6074 Arabidopsis halleri
Araha.12231s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold12231: 2646-3645 Arabidopsis halleri
Araha.12231s0002 1.0kb downstream 1.0kb downstream 3429 true Scaffold12231: 3646-7074 Arabidopsis halleri
Araha.12231s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold12231: 6075-7074 Arabidopsis halleri
Araha.12231s0002 2.0kb upstream 2.0kb upstream 4429 true Scaffold12231: 1646-6074 Arabidopsis halleri
Araha.12231s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold12231: 1646-3645 Arabidopsis halleri
Araha.12231s0002 2.0kb downstream 2.0kb downstream 4429 true Scaffold12231: 3646-8074 Arabidopsis halleri
Araha.12231s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold12231: 6075-8074 Arabidopsis halleri
Araha.12231s0002 5.0kb upstream 5.0kb upstream 6074 true Scaffold12231: 1-6074 Arabidopsis halleri
Araha.12231s0002 5.0kb upstream 5.0kb upstream 3645 false Scaffold12231: 1-3645 Arabidopsis halleri
Araha.12231s0002 5.0kb downstream 5.0kb downstream 7429 true Scaffold12231: 3646-11074 Arabidopsis halleri
Araha.12231s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold12231: 6075-11074 Arabidopsis halleri
Araha.12231s0002 10.0kb upstream 10.0kb upstream 6074 true Scaffold12231: 1-6074 Arabidopsis halleri
Araha.12231s0002 10.0kb upstream 10.0kb upstream 3645 false Scaffold12231: 1-3645 Arabidopsis halleri
Araha.12231s0002 10.0kb downstream 10.0kb downstream 12429 true Scaffold12231: 3646-16074 Arabidopsis halleri
Araha.12231s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold12231: 6075-16074 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369962 5261 Brassicaceae View MSA
123830593 5264 Brassicales-Malvales View MSA
124344334 5266 SBM View MSA
124238340 5268 Malvidae View MSA
124063145 5270 Rosid View MSA
123739304 5271 Pentapetalae View MSA
122790516 5272 Eudicot View MSA
122041813 5273 Angiosperm View MSA
121344367 5274 Embryophyte View MSA
123425421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain