Gene : Araha.16132s0001 A. halleri v1.1
Defline:  (1 of 2) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  1
Name:  ? Araha.16132s0001 Secondary Identifier:  ? PAC:28858277
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-695 Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.16132s0001 0.5kb upstream 0.5kb upstream 1775 true Scaffold16132: 5518-7292 Arabidopsis halleri
Araha.16132s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold16132: 5518-6017 Arabidopsis halleri
Araha.16132s0001 0.5kb downstream 0.5kb downstream 1775 true Scaffold16132: 6018-7792 Arabidopsis halleri
Araha.16132s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold16132: 7293-7792 Arabidopsis halleri
Araha.16132s0001 1.0kb upstream 1.0kb upstream 2275 true Scaffold16132: 5018-7292 Arabidopsis halleri
Araha.16132s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold16132: 5018-6017 Arabidopsis halleri
Araha.16132s0001 1.0kb downstream 1.0kb downstream 2275 true Scaffold16132: 6018-8292 Arabidopsis halleri
Araha.16132s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold16132: 7293-8292 Arabidopsis halleri
Araha.16132s0001 2.0kb upstream 2.0kb upstream 3275 true Scaffold16132: 4018-7292 Arabidopsis halleri
Araha.16132s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold16132: 4018-6017 Arabidopsis halleri
Araha.16132s0001 2.0kb downstream 2.0kb downstream 3275 true Scaffold16132: 6018-9292 Arabidopsis halleri
Araha.16132s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold16132: 7293-9292 Arabidopsis halleri
Araha.16132s0001 5.0kb upstream 5.0kb upstream 6275 true Scaffold16132: 1018-7292 Arabidopsis halleri
Araha.16132s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold16132: 1018-6017 Arabidopsis halleri
Araha.16132s0001 5.0kb downstream 5.0kb downstream 6275 true Scaffold16132: 6018-12292 Arabidopsis halleri
Araha.16132s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold16132: 7293-12292 Arabidopsis halleri
Araha.16132s0001 10.0kb upstream 10.0kb upstream 7292 true Scaffold16132: 1-7292 Arabidopsis halleri
Araha.16132s0001 10.0kb upstream 10.0kb upstream 6017 false Scaffold16132: 1-6017 Arabidopsis halleri
Araha.16132s0001 10.0kb downstream 10.0kb downstream 11275 true Scaffold16132: 6018-17292 Arabidopsis halleri
Araha.16132s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold16132: 7293-17292 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361119 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain