Gene : Araha.19321s0007 A. halleri v1.1
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  7
Name:  ? Araha.19321s0007 Secondary Identifier:  ? PAC:28861582
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.19321s0007 0.5kb upstream 0.5kb upstream 2824 true Scaffold19321: 16092-18915 Arabidopsis halleri
Araha.19321s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold19321: 18416-18915 Arabidopsis halleri
Araha.19321s0007 0.5kb downstream 0.5kb downstream 2824 true Scaffold19321: 15592-18415 Arabidopsis halleri
Araha.19321s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold19321: 15592-16091 Arabidopsis halleri
Araha.19321s0007 1.0kb upstream 1.0kb upstream 3324 true Scaffold19321: 16092-19415 Arabidopsis halleri
Araha.19321s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold19321: 18416-19415 Arabidopsis halleri
Araha.19321s0007 1.0kb downstream 1.0kb downstream 3324 true Scaffold19321: 15092-18415 Arabidopsis halleri
Araha.19321s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold19321: 15092-16091 Arabidopsis halleri
Araha.19321s0007 2.0kb upstream 2.0kb upstream 4324 true Scaffold19321: 16092-20415 Arabidopsis halleri
Araha.19321s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold19321: 18416-20415 Arabidopsis halleri
Araha.19321s0007 2.0kb downstream 2.0kb downstream 4324 true Scaffold19321: 14092-18415 Arabidopsis halleri
Araha.19321s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold19321: 14092-16091 Arabidopsis halleri
Araha.19321s0007 5.0kb upstream 5.0kb upstream 7324 true Scaffold19321: 16092-23415 Arabidopsis halleri
Araha.19321s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold19321: 18416-23415 Arabidopsis halleri
Araha.19321s0007 5.0kb downstream 5.0kb downstream 7324 true Scaffold19321: 11092-18415 Arabidopsis halleri
Araha.19321s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold19321: 11092-16091 Arabidopsis halleri
Araha.19321s0007 10.0kb upstream 10.0kb upstream 12324 true Scaffold19321: 16092-28415 Arabidopsis halleri
Araha.19321s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold19321: 18416-28415 Arabidopsis halleri
Araha.19321s0007 10.0kb downstream 10.0kb downstream 12324 true Scaffold19321: 6092-18415 Arabidopsis halleri
Araha.19321s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold19321: 6092-16091 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360414 5261 Brassicaceae View MSA
123797948 5264 Brassicales-Malvales View MSA
124295645 5266 SBM View MSA
124148023 5268 Malvidae View MSA
123874109 5270 Rosid View MSA
123746059 5271 Pentapetalae View MSA
122771759 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain