Gene : Araha.19260s0002 A. halleri v1.1
Defline:  (1 of 3) PTHR12183:SF16 - PROTEIN ABERRANT POLLEN DEVELOPMENT 1-RELATED Genomic Order:  2
Name:  ? Araha.19260s0002 Secondary Identifier:  ? PAC:28860636
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-7511 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.19260s0002 0.5kb upstream 0.5kb upstream 3190 true Scaffold19260: 5618-8807 Arabidopsis halleri
Araha.19260s0002 0.5kb upstream 0.5kb upstream 158 false Scaffold19260: 8650-8807 Arabidopsis halleri
Araha.19260s0002 0.5kb downstream 0.5kb downstream 3532 true Scaffold19260: 5118-8649 Arabidopsis halleri
Araha.19260s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold19260: 5118-5617 Arabidopsis halleri
Araha.19260s0002 1.0kb upstream 1.0kb upstream 3190 true Scaffold19260: 5618-8807 Arabidopsis halleri
Araha.19260s0002 1.0kb upstream 1.0kb upstream 158 false Scaffold19260: 8650-8807 Arabidopsis halleri
Araha.19260s0002 1.0kb downstream 1.0kb downstream 4032 true Scaffold19260: 4618-8649 Arabidopsis halleri
Araha.19260s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold19260: 4618-5617 Arabidopsis halleri
Araha.19260s0002 2.0kb upstream 2.0kb upstream 3190 true Scaffold19260: 5618-8807 Arabidopsis halleri
Araha.19260s0002 2.0kb upstream 2.0kb upstream 158 false Scaffold19260: 8650-8807 Arabidopsis halleri
Araha.19260s0002 2.0kb downstream 2.0kb downstream 5032 true Scaffold19260: 3618-8649 Arabidopsis halleri
Araha.19260s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold19260: 3618-5617 Arabidopsis halleri
Araha.19260s0002 5.0kb upstream 5.0kb upstream 3190 true Scaffold19260: 5618-8807 Arabidopsis halleri
Araha.19260s0002 5.0kb upstream 5.0kb upstream 158 false Scaffold19260: 8650-8807 Arabidopsis halleri
Araha.19260s0002 5.0kb downstream 5.0kb downstream 8032 true Scaffold19260: 618-8649 Arabidopsis halleri
Araha.19260s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold19260: 618-5617 Arabidopsis halleri
Araha.19260s0002 10.0kb upstream 10.0kb upstream 3190 true Scaffold19260: 5618-8807 Arabidopsis halleri
Araha.19260s0002 10.0kb upstream 10.0kb upstream 158 false Scaffold19260: 8650-8807 Arabidopsis halleri
Araha.19260s0002 10.0kb downstream 10.0kb downstream 8649 true Scaffold19260: 1-8649 Arabidopsis halleri
Araha.19260s0002 10.0kb downstream 10.0kb downstream 5617 false Scaffold19260: 1-5617 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122792833 5272 Eudicot View MSA
122372964 5261 Brassicaceae View MSA
123838874 5264 Brassicales-Malvales View MSA
124344193 5266 SBM View MSA
124250832 5268 Malvidae View MSA
124070780 5270 Rosid View MSA
123741557 5271 Pentapetalae View MSA
122042274 5273 Angiosperm View MSA
121349312 5274 Embryophyte View MSA
123381271 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain