Gene : Araha.21283s0002 A. halleri v1.1
Defline:  (1 of 1) PTHR36814:SF1 - PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC Genomic Order:  2
Name:  ? Araha.21283s0002 Secondary Identifier:  ? PAC:28857888
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PHOTOALL-PWY Arabidopsis halleri pathologic  
Ahalleri PWY-101 Arabidopsis halleri pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.21283s0002 0.5kb upstream 0.5kb upstream 1394 true Scaffold21283: 5042-6435 Arabidopsis halleri
Araha.21283s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold21283: 5936-6435 Arabidopsis halleri
Araha.21283s0002 0.5kb downstream 0.5kb downstream 1394 true Scaffold21283: 4542-5935 Arabidopsis halleri
Araha.21283s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold21283: 4542-5041 Arabidopsis halleri
Araha.21283s0002 1.0kb upstream 1.0kb upstream 1894 true Scaffold21283: 5042-6935 Arabidopsis halleri
Araha.21283s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold21283: 5936-6935 Arabidopsis halleri
Araha.21283s0002 1.0kb downstream 1.0kb downstream 1894 true Scaffold21283: 4042-5935 Arabidopsis halleri
Araha.21283s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold21283: 4042-5041 Arabidopsis halleri
Araha.21283s0002 2.0kb upstream 2.0kb upstream 2894 true Scaffold21283: 5042-7935 Arabidopsis halleri
Araha.21283s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold21283: 5936-7935 Arabidopsis halleri
Araha.21283s0002 2.0kb downstream 2.0kb downstream 2894 true Scaffold21283: 3042-5935 Arabidopsis halleri
Araha.21283s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold21283: 3042-5041 Arabidopsis halleri
Araha.21283s0002 5.0kb upstream 5.0kb upstream 5894 true Scaffold21283: 5042-10935 Arabidopsis halleri
Araha.21283s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold21283: 5936-10935 Arabidopsis halleri
Araha.21283s0002 5.0kb downstream 5.0kb downstream 5894 true Scaffold21283: 42-5935 Arabidopsis halleri
Araha.21283s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold21283: 42-5041 Arabidopsis halleri
Araha.21283s0002 10.0kb upstream 10.0kb upstream 10894 true Scaffold21283: 5042-15935 Arabidopsis halleri
Araha.21283s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold21283: 5936-15935 Arabidopsis halleri
Araha.21283s0002 10.0kb downstream 10.0kb downstream 5935 true Scaffold21283: 1-5935 Arabidopsis halleri
Araha.21283s0002 10.0kb downstream 10.0kb downstream 5041 false Scaffold21283: 1-5041 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379463 5261 Brassicaceae View MSA
123830230 5264 Brassicales-Malvales View MSA
124345790 5266 SBM View MSA
124247840 5268 Malvidae View MSA
124061914 5270 Rosid View MSA
123739503 5271 Pentapetalae View MSA
122786700 5272 Eudicot View MSA
122046387 5273 Angiosperm View MSA
121346900 5274 Embryophyte View MSA
123425334 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain