Gene : Araha.23900s0003 A. halleri v1.1
Defline:  (1 of 1) KOG2368 - Hydroxymethylglutaryl-CoA lyase Genomic Order:  3
Name:  ? Araha.23900s0003 Secondary Identifier:  ? PAC:28849691
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis halleri pathologic  
Ahalleri LEUSYN-PWY Arabidopsis halleri pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.23900s0003 0.5kb upstream 0.5kb upstream 2692 true Scaffold23900: 19745-22436 Arabidopsis halleri
Araha.23900s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold23900: 19745-20244 Arabidopsis halleri
Araha.23900s0003 0.5kb downstream 0.5kb downstream 2193 true Scaffold23900: 20245-22437 Arabidopsis halleri
Araha.23900s0003 0.5kb downstream 0.5kb downstream 1 false Scaffold23900: 22437-22437 Arabidopsis halleri
Araha.23900s0003 1.0kb upstream 1.0kb upstream 3192 true Scaffold23900: 19245-22436 Arabidopsis halleri
Araha.23900s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold23900: 19245-20244 Arabidopsis halleri
Araha.23900s0003 1.0kb downstream 1.0kb downstream 2193 true Scaffold23900: 20245-22437 Arabidopsis halleri
Araha.23900s0003 1.0kb downstream 1.0kb downstream 1 false Scaffold23900: 22437-22437 Arabidopsis halleri
Araha.23900s0003 2.0kb upstream 2.0kb upstream 4192 true Scaffold23900: 18245-22436 Arabidopsis halleri
Araha.23900s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold23900: 18245-20244 Arabidopsis halleri
Araha.23900s0003 2.0kb downstream 2.0kb downstream 2193 true Scaffold23900: 20245-22437 Arabidopsis halleri
Araha.23900s0003 2.0kb downstream 2.0kb downstream 1 false Scaffold23900: 22437-22437 Arabidopsis halleri
Araha.23900s0003 5.0kb upstream 5.0kb upstream 7192 true Scaffold23900: 15245-22436 Arabidopsis halleri
Araha.23900s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold23900: 15245-20244 Arabidopsis halleri
Araha.23900s0003 5.0kb downstream 5.0kb downstream 2193 true Scaffold23900: 20245-22437 Arabidopsis halleri
Araha.23900s0003 5.0kb downstream 5.0kb downstream 1 false Scaffold23900: 22437-22437 Arabidopsis halleri
Araha.23900s0003 10.0kb upstream 10.0kb upstream 12192 true Scaffold23900: 10245-22436 Arabidopsis halleri
Araha.23900s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold23900: 10245-20244 Arabidopsis halleri
Araha.23900s0003 10.0kb downstream 10.0kb downstream 2193 true Scaffold23900: 20245-22437 Arabidopsis halleri
Araha.23900s0003 10.0kb downstream 10.0kb downstream 1 false Scaffold23900: 22437-22437 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368182 5261 Brassicaceae View MSA
123799505 5264 Brassicales-Malvales View MSA
124297020 5266 SBM View MSA
124250299 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain