Gene : Araha.24237s0009 A. halleri v1.1
Defline:  (1 of 2) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  9
Name:  ? Araha.24237s0009 Secondary Identifier:  ? PAC:28847284
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ahalleri PWY-695 Arabidopsis halleri pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Araha.24237s0009 0.5kb upstream 0.5kb upstream 2607 true Scaffold24237: 42894-45500 Arabidopsis halleri
Araha.24237s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold24237: 42894-43393 Arabidopsis halleri
Araha.24237s0009 0.5kb downstream 0.5kb downstream 2607 true Scaffold24237: 43394-46000 Arabidopsis halleri
Araha.24237s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold24237: 45501-46000 Arabidopsis halleri
Araha.24237s0009 1.0kb upstream 1.0kb upstream 3107 true Scaffold24237: 42394-45500 Arabidopsis halleri
Araha.24237s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold24237: 42394-43393 Arabidopsis halleri
Araha.24237s0009 1.0kb downstream 1.0kb downstream 3107 true Scaffold24237: 43394-46500 Arabidopsis halleri
Araha.24237s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold24237: 45501-46500 Arabidopsis halleri
Araha.24237s0009 2.0kb upstream 2.0kb upstream 4107 true Scaffold24237: 41394-45500 Arabidopsis halleri
Araha.24237s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold24237: 41394-43393 Arabidopsis halleri
Araha.24237s0009 2.0kb downstream 2.0kb downstream 4107 true Scaffold24237: 43394-47500 Arabidopsis halleri
Araha.24237s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold24237: 45501-47500 Arabidopsis halleri
Araha.24237s0009 5.0kb upstream 5.0kb upstream 7107 true Scaffold24237: 38394-45500 Arabidopsis halleri
Araha.24237s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold24237: 38394-43393 Arabidopsis halleri
Araha.24237s0009 5.0kb downstream 5.0kb downstream 7107 true Scaffold24237: 43394-50500 Arabidopsis halleri
Araha.24237s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold24237: 45501-50500 Arabidopsis halleri
Araha.24237s0009 10.0kb upstream 10.0kb upstream 12107 true Scaffold24237: 33394-45500 Arabidopsis halleri
Araha.24237s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold24237: 33394-43393 Arabidopsis halleri
Araha.24237s0009 10.0kb downstream 10.0kb downstream 7303 true Scaffold24237: 43394-50696 Arabidopsis halleri
Araha.24237s0009 10.0kb downstream 10.0kb downstream 5196 false Scaffold24237: 45501-50696 Arabidopsis halleri

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366050 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain