Gene : Cagra.0050s0134 C. grandiflora v1.1
Defline:  (1 of 3) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  134
Name:  ? Cagra.0050s0134 Secondary Identifier:  ? PAC:28916964
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0050s0134 0.5kb upstream 0.5kb upstream 4043 true Scaffold50: 520347-524389 Capsella grandiflora
Cagra.0050s0134 0.5kb upstream 0.5kb upstream 500 false Scaffold50: 520347-520846 Capsella grandiflora
Cagra.0050s0134 0.5kb downstream 0.5kb downstream 4043 true Scaffold50: 520847-524889 Capsella grandiflora
Cagra.0050s0134 0.5kb downstream 0.5kb downstream 500 false Scaffold50: 524390-524889 Capsella grandiflora
Cagra.0050s0134 1.0kb upstream 1.0kb upstream 4543 true Scaffold50: 519847-524389 Capsella grandiflora
Cagra.0050s0134 1.0kb upstream 1.0kb upstream 1000 false Scaffold50: 519847-520846 Capsella grandiflora
Cagra.0050s0134 1.0kb downstream 1.0kb downstream 4543 true Scaffold50: 520847-525389 Capsella grandiflora
Cagra.0050s0134 1.0kb downstream 1.0kb downstream 1000 false Scaffold50: 524390-525389 Capsella grandiflora
Cagra.0050s0134 2.0kb upstream 2.0kb upstream 5543 true Scaffold50: 518847-524389 Capsella grandiflora
Cagra.0050s0134 2.0kb upstream 2.0kb upstream 2000 false Scaffold50: 518847-520846 Capsella grandiflora
Cagra.0050s0134 2.0kb downstream 2.0kb downstream 5543 true Scaffold50: 520847-526389 Capsella grandiflora
Cagra.0050s0134 2.0kb downstream 2.0kb downstream 2000 false Scaffold50: 524390-526389 Capsella grandiflora
Cagra.0050s0134 5.0kb upstream 5.0kb upstream 8543 true Scaffold50: 515847-524389 Capsella grandiflora
Cagra.0050s0134 5.0kb upstream 5.0kb upstream 5000 false Scaffold50: 515847-520846 Capsella grandiflora
Cagra.0050s0134 5.0kb downstream 5.0kb downstream 8543 true Scaffold50: 520847-529389 Capsella grandiflora
Cagra.0050s0134 5.0kb downstream 5.0kb downstream 5000 false Scaffold50: 524390-529389 Capsella grandiflora
Cagra.0050s0134 10.0kb upstream 10.0kb upstream 13543 true Scaffold50: 510847-524389 Capsella grandiflora
Cagra.0050s0134 10.0kb upstream 10.0kb upstream 10000 false Scaffold50: 510847-520846 Capsella grandiflora
Cagra.0050s0134 10.0kb downstream 10.0kb downstream 13543 true Scaffold50: 520847-534389 Capsella grandiflora
Cagra.0050s0134 10.0kb downstream 10.0kb downstream 10000 false Scaffold50: 524390-534389 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380649 5261 Brassicaceae View MSA
123834671 5264 Brassicales-Malvales View MSA
124347813 5266 SBM View MSA
124252932 5268 Malvidae View MSA
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain