Gene : Cagra.0050s0017 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12802:SF43 - PROTEIN CCA1-RELATED Genomic Order:  17
Name:  ? Cagra.0050s0017 Secondary Identifier:  ? PAC:28916989
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0050s0017 0.5kb upstream 0.5kb upstream 3743 true Scaffold50: 61417-65159 Capsella grandiflora
Cagra.0050s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold50: 64660-65159 Capsella grandiflora
Cagra.0050s0017 0.5kb downstream 0.5kb downstream 3743 true Scaffold50: 60917-64659 Capsella grandiflora
Cagra.0050s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold50: 60917-61416 Capsella grandiflora
Cagra.0050s0017 1.0kb upstream 1.0kb upstream 4243 true Scaffold50: 61417-65659 Capsella grandiflora
Cagra.0050s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold50: 64660-65659 Capsella grandiflora
Cagra.0050s0017 1.0kb downstream 1.0kb downstream 4243 true Scaffold50: 60417-64659 Capsella grandiflora
Cagra.0050s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold50: 60417-61416 Capsella grandiflora
Cagra.0050s0017 2.0kb upstream 2.0kb upstream 5243 true Scaffold50: 61417-66659 Capsella grandiflora
Cagra.0050s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold50: 64660-66659 Capsella grandiflora
Cagra.0050s0017 2.0kb downstream 2.0kb downstream 5243 true Scaffold50: 59417-64659 Capsella grandiflora
Cagra.0050s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold50: 59417-61416 Capsella grandiflora
Cagra.0050s0017 5.0kb upstream 5.0kb upstream 8243 true Scaffold50: 61417-69659 Capsella grandiflora
Cagra.0050s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold50: 64660-69659 Capsella grandiflora
Cagra.0050s0017 5.0kb downstream 5.0kb downstream 8243 true Scaffold50: 56417-64659 Capsella grandiflora
Cagra.0050s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold50: 56417-61416 Capsella grandiflora
Cagra.0050s0017 10.0kb upstream 10.0kb upstream 13243 true Scaffold50: 61417-74659 Capsella grandiflora
Cagra.0050s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold50: 64660-74659 Capsella grandiflora
Cagra.0050s0017 10.0kb downstream 10.0kb downstream 13243 true Scaffold50: 51417-64659 Capsella grandiflora
Cagra.0050s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold50: 51417-61416 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369628 5261 Brassicaceae View MSA
123799812 5264 Brassicales-Malvales View MSA
124346704 5266 SBM View MSA
124237237 5268 Malvidae View MSA
124066959 5270 Rosid View MSA
123746755 5271 Pentapetalae View MSA
122793236 5272 Eudicot View MSA
122048982 5273 Angiosperm View MSA
121350117 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain