Protein Family : circadian clock associated 1 123427162

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  496

496 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29805.t000028 (1 of 1) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED R. communis v0.1 3098   29805: 147592-150689
30076.t000028 (1 of 1) K12133 - MYB-related transcription factor LHY (LHY) R. communis v0.1 9468   30076: 142258-151725
30169.t000393 (1 of 1) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED // SUBFAMILY NOT NAMED R. communis v0.1 3438   30169: 2065912-2069349
30171.t000015 (1 of 2) PTHR12802//PTHR12802:SF60 - SWI/SNF COMPLEX-RELATED // PROTEIN REVEILLE 1-RELATED R. communis v0.1 1842   30171: 242630-244471
29677.t000002 (1 of 2) PTHR12802//PTHR12802:SF60 - SWI/SNF COMPLEX-RELATED // PROTEIN REVEILLE 1-RELATED R. communis v0.1 2104   29677: 181751-183854
Cucsa.112530 (1 of 1) PTHR12802:SF37 - PROTEIN REVEILLE 7-LIKE C. sativus v1.0 2835   scaffold00953: 1063484-1066318
Cucsa.192960 (1 of 3) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED C. sativus v1.0 4664   scaffold01335: 15375-20038
Cucsa.258660 (1 of 3) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED C. sativus v1.0 3820   scaffold02229: 5501304-5505123
Cucsa.278220 (1 of 1) PTHR12802:SF60 - PROTEIN REVEILLE 1-RELATED C. sativus v1.0 3461   scaffold02609: 42805-46265
Cucsa.307250 (1 of 1) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED C. sativus v1.0 2179   scaffold02977: 483260-485438
Cucsa.349800 (1 of 1) PTHR12802:SF43 - PROTEIN CCA1-RELATED C. sativus v1.0 13432   scaffold03487: 991816-1005247
orange1.1g020389m.g (1 of 2) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED C. sinensis v1.1 3531   scaffold00097: 167933-171463
orange1.1g021851m.g (1 of 2) PTHR12802:SF60 - PROTEIN REVEILLE 1-RELATED C. sinensis v1.1 3092   scaffold00459: 29963-33054
orange1.1g004262m.g (1 of 1) PTHR12802:SF43 - PROTEIN CCA1-RELATED C. sinensis v1.1 7100   scaffold00001: 3456064-3463163
orange1.1g040811m.g (1 of 2) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED C. sinensis v1.1 3387   scaffold00172: 38316-41702
orange1.1g019104m.g (1 of 2) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED C. sinensis v1.1 4515   scaffold00001: 2265022-2269536
AT4G01280 (1 of 2) PTHR12802//PTHR12802:SF49 - SWI/SNF COMPLEX-RELATED // PROTEIN REVEILLE 3-RELATED A. thaliana TAIR10 2112   Chr4: 535211-537322
AT5G02840 (1 of 2) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED A. thaliana TAIR10 LCL1 3269   Chr5: 648704-651972
AT5G17300 (1 of 2) PTHR12802//PTHR12802:SF60 - SWI/SNF COMPLEX-RELATED // PROTEIN REVEILLE 1-RELATED A. thaliana TAIR10 RVE1 2676   Chr5: 5690227-5692902
AT5G52660 (1 of 1) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED // SUBFAMILY NOT NAMED A. thaliana TAIR10 3102   Chr5: 21359059-21362160
AT3G09600 (1 of 2) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED A. thaliana TAIR10 2590   Chr3: 2946406-2948995
AT3G10113 (1 of 2) PTHR12802//PTHR12802:SF37 - SWI/SNF COMPLEX-RELATED // PROTEIN REVEILLE 7-LIKE A. thaliana TAIR10 1349   Chr3: 3118043-3119391
AT1G01060 (1 of 1) K12133 - MYB-related transcription factor LHY (LHY) A. thaliana TAIR10 LHY 4493   Chr1: 33379-37871
AT1G18330 (1 of 2) PTHR12802//PTHR12802:SF37 - SWI/SNF COMPLEX-RELATED // PROTEIN REVEILLE 7-LIKE A. thaliana TAIR10 EPR1 2048   Chr1: 6305966-6308013
AT2G46830 (1 of 1) K12134 - circadian clock associated 1 (CCA1) A. thaliana TAIR10 CCA1 3243   Chr2: 19245672-19248914
Thhalv10021220m.g (1 of 2) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED E. salsugineum v1.0 2954   scaffold_13: 6458037-6460990
Thhalv10013821m.g (1 of 2) PTHR12802:SF60 - PROTEIN REVEILLE 1-RELATED E. salsugineum v1.0 1973   scaffold_2: 5824990-5826962
Thhalv10014069m.g (1 of 1) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED E. salsugineum v1.0 2983   scaffold_2: 12362687-12365669
Thhalv10014025m.g (1 of 2) PTHR12802:SF52 - PROTEIN REVEILLE 4-RELATED E. salsugineum v1.0 3229   scaffold_2: 652717-655945
Thhalv10028806m.g (1 of 2) PTHR12802:SF49 - PROTEIN REVEILLE 3-RELATED E. salsugineum v1.0 1989   scaffold_3: 361168-363156

496 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30076.m004464 R. communis v0.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
30169.m006616 R. communis v0.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
30171.m000418 R. communis v0.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
29677.m000183 R. communis v0.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
29805.m001497 R. communis v0.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
Cucsa.192960.1 C. sativus v1.0 123427162 circadian clock associated 1 6 5275 Viridiplantae
Cucsa.258660.1 C. sativus v1.0 123427162 circadian clock associated 1 6 5275 Viridiplantae
Cucsa.278220.1 C. sativus v1.0 123427162 circadian clock associated 1 6 5275 Viridiplantae
Cucsa.307250.1 C. sativus v1.0 123427162 circadian clock associated 1 6 5275 Viridiplantae
Cucsa.349800.1 C. sativus v1.0 123427162 circadian clock associated 1 6 5275 Viridiplantae
Cucsa.112530.1 C. sativus v1.0 123427162 circadian clock associated 1 6 5275 Viridiplantae
orange1.1g021851m C. sinensis v1.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
orange1.1g020389m C. sinensis v1.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
orange1.1g004262m C. sinensis v1.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
orange1.1g040811m C. sinensis v1.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
orange1.1g019104m C. sinensis v1.1 123427162 circadian clock associated 1 5 5275 Viridiplantae
AT5G02840.1 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT5G17300.1 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT5G52660.2 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT3G10113.1 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT3G09600.1 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT1G01060.1 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT1G18330.2 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT2G46830.1 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
AT4G01280.2 A. thaliana TAIR10 123427162 circadian clock associated 1 9 5275 Viridiplantae
Thhalv10013821m E. salsugineum v1.0 123427162 circadian clock associated 1 7 5275 Viridiplantae
Thhalv10014069m E. salsugineum v1.0 123427162 circadian clock associated 1 7 5275 Viridiplantae
Thhalv10014025m E. salsugineum v1.0 123427162 circadian clock associated 1 7 5275 Viridiplantae
Thhalv10028806m E. salsugineum v1.0 123427162 circadian clock associated 1 7 5275 Viridiplantae
Thhalv10007028m E. salsugineum v1.0 123427162 circadian clock associated 1 7 5275 Viridiplantae