Gene : LHY A. thaliana TAIR10
Primary Identifier:  ? AT1G01060 Defline:  (1 of 1) K12133 - MYB-related transcription factor LHY (LHY)
Genomic Order:  6 Name:  ? AT1G01060
Secondary Identifier:  ? PAC:19652702
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G01060 0.5kb upstream 0.5kb upstream 4993 true Chr1: 33379-38371 Arabidopsis thaliana
AT1G01060 0.5kb upstream 0.5kb upstream 500 false Chr1: 37872-38371 Arabidopsis thaliana
AT1G01060 0.5kb downstream 0.5kb downstream 4993 true Chr1: 32879-37871 Arabidopsis thaliana
AT1G01060 0.5kb downstream 0.5kb downstream 500 false Chr1: 32879-33378 Arabidopsis thaliana
AT1G01060 1.0kb upstream 1.0kb upstream 5493 true Chr1: 33379-38871 Arabidopsis thaliana
AT1G01060 1.0kb upstream 1.0kb upstream 1000 false Chr1: 37872-38871 Arabidopsis thaliana
AT1G01060 1.0kb downstream 1.0kb downstream 5493 true Chr1: 32379-37871 Arabidopsis thaliana
AT1G01060 1.0kb downstream 1.0kb downstream 1000 false Chr1: 32379-33378 Arabidopsis thaliana
AT1G01060 2.0kb upstream 2.0kb upstream 6493 true Chr1: 33379-39871 Arabidopsis thaliana
AT1G01060 2.0kb upstream 2.0kb upstream 2000 false Chr1: 37872-39871 Arabidopsis thaliana
AT1G01060 2.0kb downstream 2.0kb downstream 6493 true Chr1: 31379-37871 Arabidopsis thaliana
AT1G01060 2.0kb downstream 2.0kb downstream 2000 false Chr1: 31379-33378 Arabidopsis thaliana
AT1G01060 5.0kb upstream 5.0kb upstream 9493 true Chr1: 33379-42871 Arabidopsis thaliana
AT1G01060 5.0kb upstream 5.0kb upstream 5000 false Chr1: 37872-42871 Arabidopsis thaliana
AT1G01060 5.0kb downstream 5.0kb downstream 9493 true Chr1: 28379-37871 Arabidopsis thaliana
AT1G01060 5.0kb downstream 5.0kb downstream 5000 false Chr1: 28379-33378 Arabidopsis thaliana
AT1G01060 10.0kb upstream 10.0kb upstream 14493 true Chr1: 33379-47871 Arabidopsis thaliana
AT1G01060 10.0kb upstream 10.0kb upstream 10000 false Chr1: 37872-47871 Arabidopsis thaliana
AT1G01060 10.0kb downstream 10.0kb downstream 14493 true Chr1: 23379-37871 Arabidopsis thaliana
AT1G01060 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23379-33378 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372845 5261 Brassicaceae View MSA
123827456 5264 Brassicales-Malvales View MSA
124346704 5266 SBM View MSA
124237237 5268 Malvidae View MSA
124066959 5270 Rosid View MSA
123746755 5271 Pentapetalae View MSA
122793236 5272 Eudicot View MSA
122048982 5273 Angiosperm View MSA
121350117 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.059     Low Low
cufflinks 0.269     Low  
cufflinks 0.321        
cufflinks 0.506        
cufflinks 0.612       High
cufflinks 0.104     Low  

0 Strain