Gene : AT5G52660 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12802//PTHR12802:SF48 - SWI/SNF COMPLEX-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4701
Name:  ? AT5G52660 Secondary Identifier:  ? PAC:19670017
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52660 0.5kb upstream 0.5kb upstream 3602 true Chr5: 21359059-21362660 Arabidopsis thaliana
AT5G52660 0.5kb upstream 0.5kb upstream 500 false Chr5: 21362161-21362660 Arabidopsis thaliana
AT5G52660 0.5kb downstream 0.5kb downstream 3602 true Chr5: 21358559-21362160 Arabidopsis thaliana
AT5G52660 0.5kb downstream 0.5kb downstream 500 false Chr5: 21358559-21359058 Arabidopsis thaliana
AT5G52660 1.0kb upstream 1.0kb upstream 4102 true Chr5: 21359059-21363160 Arabidopsis thaliana
AT5G52660 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21362161-21363160 Arabidopsis thaliana
AT5G52660 1.0kb downstream 1.0kb downstream 4102 true Chr5: 21358059-21362160 Arabidopsis thaliana
AT5G52660 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21358059-21359058 Arabidopsis thaliana
AT5G52660 2.0kb upstream 2.0kb upstream 5102 true Chr5: 21359059-21364160 Arabidopsis thaliana
AT5G52660 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21362161-21364160 Arabidopsis thaliana
AT5G52660 2.0kb downstream 2.0kb downstream 5102 true Chr5: 21357059-21362160 Arabidopsis thaliana
AT5G52660 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21357059-21359058 Arabidopsis thaliana
AT5G52660 5.0kb upstream 5.0kb upstream 8102 true Chr5: 21359059-21367160 Arabidopsis thaliana
AT5G52660 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21362161-21367160 Arabidopsis thaliana
AT5G52660 5.0kb downstream 5.0kb downstream 8102 true Chr5: 21354059-21362160 Arabidopsis thaliana
AT5G52660 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21354059-21359058 Arabidopsis thaliana
AT5G52660 10.0kb upstream 10.0kb upstream 13102 true Chr5: 21359059-21372160 Arabidopsis thaliana
AT5G52660 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21362161-21372160 Arabidopsis thaliana
AT5G52660 10.0kb downstream 10.0kb downstream 13102 true Chr5: 21349059-21362160 Arabidopsis thaliana
AT5G52660 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21349059-21359058 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367725 5261 Brassicaceae View MSA
123832365 5264 Brassicales-Malvales View MSA
124336850 5266 SBM View MSA
124242152 5268 Malvidae View MSA
124066393 5270 Rosid View MSA
123747099 5271 Pentapetalae View MSA
122797418 5272 Eudicot View MSA
122043190 5273 Angiosperm View MSA
121350765 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.562        
cufflinks 2.179        
cufflinks 1.469       Low
cufflinks 2.266       High
cufflinks 1.667        
cufflinks 2.049        

0 Strain