Gene : Cagra.0050s0018 C. grandiflora v1.1
Defline:  (1 of 1) PTHR33222:SF9 - PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC Genomic Order:  18
Name:  ? Cagra.0050s0018 Secondary Identifier:  ? PAC:28917004
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0050s0018 0.5kb upstream 0.5kb upstream 2096 true Scaffold50: 65426-67521 Capsella grandiflora
Cagra.0050s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold50: 67022-67521 Capsella grandiflora
Cagra.0050s0018 0.5kb downstream 0.5kb downstream 2096 true Scaffold50: 64926-67021 Capsella grandiflora
Cagra.0050s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold50: 64926-65425 Capsella grandiflora
Cagra.0050s0018 1.0kb upstream 1.0kb upstream 2596 true Scaffold50: 65426-68021 Capsella grandiflora
Cagra.0050s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold50: 67022-68021 Capsella grandiflora
Cagra.0050s0018 1.0kb downstream 1.0kb downstream 2596 true Scaffold50: 64426-67021 Capsella grandiflora
Cagra.0050s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold50: 64426-65425 Capsella grandiflora
Cagra.0050s0018 2.0kb upstream 2.0kb upstream 3596 true Scaffold50: 65426-69021 Capsella grandiflora
Cagra.0050s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold50: 67022-69021 Capsella grandiflora
Cagra.0050s0018 2.0kb downstream 2.0kb downstream 3596 true Scaffold50: 63426-67021 Capsella grandiflora
Cagra.0050s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold50: 63426-65425 Capsella grandiflora
Cagra.0050s0018 5.0kb upstream 5.0kb upstream 6596 true Scaffold50: 65426-72021 Capsella grandiflora
Cagra.0050s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold50: 67022-72021 Capsella grandiflora
Cagra.0050s0018 5.0kb downstream 5.0kb downstream 6596 true Scaffold50: 60426-67021 Capsella grandiflora
Cagra.0050s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold50: 60426-65425 Capsella grandiflora
Cagra.0050s0018 10.0kb upstream 10.0kb upstream 11596 true Scaffold50: 65426-77021 Capsella grandiflora
Cagra.0050s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold50: 67022-77021 Capsella grandiflora
Cagra.0050s0018 10.0kb downstream 10.0kb downstream 11596 true Scaffold50: 55426-67021 Capsella grandiflora
Cagra.0050s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold50: 55426-65425 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367981 5261 Brassicaceae View MSA
123829580 5264 Brassicales-Malvales View MSA
124343674 5266 SBM View MSA
124248900 5268 Malvidae View MSA
124068427 5270 Rosid View MSA
123747086 5271 Pentapetalae View MSA
122793406 5272 Eudicot View MSA
122042391 5273 Angiosperm View MSA
121347672 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain