Gene : Cagra.0005s0008 C. grandiflora v1.1
Defline:  (1 of 43) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  8
Name:  ? Cagra.0005s0008 Secondary Identifier:  ? PAC:28897144
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0005s0008 0.5kb upstream 0.5kb upstream 3505 true Scaffold5: 42076-45580 Capsella grandiflora
Cagra.0005s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold5: 42076-42575 Capsella grandiflora
Cagra.0005s0008 0.5kb downstream 0.5kb downstream 3505 true Scaffold5: 42576-46080 Capsella grandiflora
Cagra.0005s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold5: 45581-46080 Capsella grandiflora
Cagra.0005s0008 1.0kb upstream 1.0kb upstream 4005 true Scaffold5: 41576-45580 Capsella grandiflora
Cagra.0005s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold5: 41576-42575 Capsella grandiflora
Cagra.0005s0008 1.0kb downstream 1.0kb downstream 4005 true Scaffold5: 42576-46580 Capsella grandiflora
Cagra.0005s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold5: 45581-46580 Capsella grandiflora
Cagra.0005s0008 2.0kb upstream 2.0kb upstream 5005 true Scaffold5: 40576-45580 Capsella grandiflora
Cagra.0005s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold5: 40576-42575 Capsella grandiflora
Cagra.0005s0008 2.0kb downstream 2.0kb downstream 5005 true Scaffold5: 42576-47580 Capsella grandiflora
Cagra.0005s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold5: 45581-47580 Capsella grandiflora
Cagra.0005s0008 5.0kb upstream 5.0kb upstream 8005 true Scaffold5: 37576-45580 Capsella grandiflora
Cagra.0005s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold5: 37576-42575 Capsella grandiflora
Cagra.0005s0008 5.0kb downstream 5.0kb downstream 8005 true Scaffold5: 42576-50580 Capsella grandiflora
Cagra.0005s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold5: 45581-50580 Capsella grandiflora
Cagra.0005s0008 10.0kb upstream 10.0kb upstream 13005 true Scaffold5: 32576-45580 Capsella grandiflora
Cagra.0005s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold5: 32576-42575 Capsella grandiflora
Cagra.0005s0008 10.0kb downstream 10.0kb downstream 11851 true Scaffold5: 42576-54426 Capsella grandiflora
Cagra.0005s0008 10.0kb downstream 10.0kb downstream 8846 false Scaffold5: 45581-54426 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365180 5261 Brassicaceae View MSA
123834667 5264 Brassicales-Malvales View MSA
124339863 5266 SBM View MSA
124237360 5268 Malvidae View MSA
124064128 5270 Rosid View MSA
123740328 5271 Pentapetalae View MSA
122789927 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain