Gene : Cagra.0448s0047 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23076:SF70 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 7, CHLOROPLASTIC-RELATED Genomic Order:  47
Name:  ? Cagra.0448s0047 Secondary Identifier:  ? PAC:28906298
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0448s0047 0.5kb upstream 0.5kb upstream 4407 true Scaffold448: 172594-177000 Capsella grandiflora
Cagra.0448s0047 0.5kb upstream 0.5kb upstream 500 false Scaffold448: 172594-173093 Capsella grandiflora
Cagra.0448s0047 0.5kb downstream 0.5kb downstream 4407 true Scaffold448: 173094-177500 Capsella grandiflora
Cagra.0448s0047 0.5kb downstream 0.5kb downstream 500 false Scaffold448: 177001-177500 Capsella grandiflora
Cagra.0448s0047 1.0kb upstream 1.0kb upstream 4907 true Scaffold448: 172094-177000 Capsella grandiflora
Cagra.0448s0047 1.0kb upstream 1.0kb upstream 1000 false Scaffold448: 172094-173093 Capsella grandiflora
Cagra.0448s0047 1.0kb downstream 1.0kb downstream 4907 true Scaffold448: 173094-178000 Capsella grandiflora
Cagra.0448s0047 1.0kb downstream 1.0kb downstream 1000 false Scaffold448: 177001-178000 Capsella grandiflora
Cagra.0448s0047 2.0kb upstream 2.0kb upstream 5907 true Scaffold448: 171094-177000 Capsella grandiflora
Cagra.0448s0047 2.0kb upstream 2.0kb upstream 2000 false Scaffold448: 171094-173093 Capsella grandiflora
Cagra.0448s0047 2.0kb downstream 2.0kb downstream 5907 true Scaffold448: 173094-179000 Capsella grandiflora
Cagra.0448s0047 2.0kb downstream 2.0kb downstream 2000 false Scaffold448: 177001-179000 Capsella grandiflora
Cagra.0448s0047 5.0kb upstream 5.0kb upstream 8907 true Scaffold448: 168094-177000 Capsella grandiflora
Cagra.0448s0047 5.0kb upstream 5.0kb upstream 5000 false Scaffold448: 168094-173093 Capsella grandiflora
Cagra.0448s0047 5.0kb downstream 5.0kb downstream 8907 true Scaffold448: 173094-182000 Capsella grandiflora
Cagra.0448s0047 5.0kb downstream 5.0kb downstream 5000 false Scaffold448: 177001-182000 Capsella grandiflora
Cagra.0448s0047 10.0kb upstream 10.0kb upstream 13907 true Scaffold448: 163094-177000 Capsella grandiflora
Cagra.0448s0047 10.0kb upstream 10.0kb upstream 10000 false Scaffold448: 163094-173093 Capsella grandiflora
Cagra.0448s0047 10.0kb downstream 10.0kb downstream 13907 true Scaffold448: 173094-187000 Capsella grandiflora
Cagra.0448s0047 10.0kb downstream 10.0kb downstream 10000 false Scaffold448: 177001-187000 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122787549 5272 Eudicot View MSA
122366481 5261 Brassicaceae View MSA
123835183 5264 Brassicales-Malvales View MSA
124351521 5266 SBM View MSA
124242131 5268 Malvidae View MSA
124063114 5270 Rosid View MSA
123748057 5271 Pentapetalae View MSA
122042272 5273 Angiosperm View MSA
121349711 5274 Embryophyte View MSA
123424503 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain