Gene : Cagra.0001s0028 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  28
Name:  ? Cagra.0001s0028 Secondary Identifier:  ? PAC:28894719
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0001s0028 0.5kb upstream 0.5kb upstream 2980 true Scaffold1: 117116-120095 Capsella grandiflora
Cagra.0001s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold1: 117116-117615 Capsella grandiflora
Cagra.0001s0028 0.5kb downstream 0.5kb downstream 2980 true Scaffold1: 117616-120595 Capsella grandiflora
Cagra.0001s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold1: 120096-120595 Capsella grandiflora
Cagra.0001s0028 1.0kb upstream 1.0kb upstream 3480 true Scaffold1: 116616-120095 Capsella grandiflora
Cagra.0001s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold1: 116616-117615 Capsella grandiflora
Cagra.0001s0028 1.0kb downstream 1.0kb downstream 3480 true Scaffold1: 117616-121095 Capsella grandiflora
Cagra.0001s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold1: 120096-121095 Capsella grandiflora
Cagra.0001s0028 2.0kb upstream 2.0kb upstream 4480 true Scaffold1: 115616-120095 Capsella grandiflora
Cagra.0001s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold1: 115616-117615 Capsella grandiflora
Cagra.0001s0028 2.0kb downstream 2.0kb downstream 4480 true Scaffold1: 117616-122095 Capsella grandiflora
Cagra.0001s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold1: 120096-122095 Capsella grandiflora
Cagra.0001s0028 5.0kb upstream 5.0kb upstream 7480 true Scaffold1: 112616-120095 Capsella grandiflora
Cagra.0001s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold1: 112616-117615 Capsella grandiflora
Cagra.0001s0028 5.0kb downstream 5.0kb downstream 5010 true Scaffold1: 117616-122625 Capsella grandiflora
Cagra.0001s0028 5.0kb downstream 5.0kb downstream 2530 false Scaffold1: 120096-122625 Capsella grandiflora
Cagra.0001s0028 10.0kb upstream 10.0kb upstream 12480 true Scaffold1: 107616-120095 Capsella grandiflora
Cagra.0001s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold1: 107616-117615 Capsella grandiflora
Cagra.0001s0028 10.0kb downstream 10.0kb downstream 5010 true Scaffold1: 117616-122625 Capsella grandiflora
Cagra.0001s0028 10.0kb downstream 10.0kb downstream 2530 false Scaffold1: 120096-122625 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363145 5261 Brassicaceae View MSA
123839847 5264 Brassicales-Malvales View MSA
124341386 5266 SBM View MSA
124247778 5268 Malvidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain