Gene : Cagra.0133s0109 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11062//PTHR11062:SF90 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED Genomic Order:  109
Name:  ? Cagra.0133s0109 Secondary Identifier:  ? PAC:28899423
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5980 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0133s0109 0.5kb upstream 0.5kb upstream 2153 true Scaffold133: 402940-405092 Capsella grandiflora
Cagra.0133s0109 0.5kb upstream 0.5kb upstream 500 false Scaffold133: 404593-405092 Capsella grandiflora
Cagra.0133s0109 0.5kb downstream 0.5kb downstream 2153 true Scaffold133: 402440-404592 Capsella grandiflora
Cagra.0133s0109 0.5kb downstream 0.5kb downstream 500 false Scaffold133: 402440-402939 Capsella grandiflora
Cagra.0133s0109 1.0kb upstream 1.0kb upstream 2653 true Scaffold133: 402940-405592 Capsella grandiflora
Cagra.0133s0109 1.0kb upstream 1.0kb upstream 1000 false Scaffold133: 404593-405592 Capsella grandiflora
Cagra.0133s0109 1.0kb downstream 1.0kb downstream 2653 true Scaffold133: 401940-404592 Capsella grandiflora
Cagra.0133s0109 1.0kb downstream 1.0kb downstream 1000 false Scaffold133: 401940-402939 Capsella grandiflora
Cagra.0133s0109 2.0kb upstream 2.0kb upstream 3653 true Scaffold133: 402940-406592 Capsella grandiflora
Cagra.0133s0109 2.0kb upstream 2.0kb upstream 2000 false Scaffold133: 404593-406592 Capsella grandiflora
Cagra.0133s0109 2.0kb downstream 2.0kb downstream 3653 true Scaffold133: 400940-404592 Capsella grandiflora
Cagra.0133s0109 2.0kb downstream 2.0kb downstream 2000 false Scaffold133: 400940-402939 Capsella grandiflora
Cagra.0133s0109 5.0kb upstream 5.0kb upstream 6653 true Scaffold133: 402940-409592 Capsella grandiflora
Cagra.0133s0109 5.0kb upstream 5.0kb upstream 5000 false Scaffold133: 404593-409592 Capsella grandiflora
Cagra.0133s0109 5.0kb downstream 5.0kb downstream 6653 true Scaffold133: 397940-404592 Capsella grandiflora
Cagra.0133s0109 5.0kb downstream 5.0kb downstream 5000 false Scaffold133: 397940-402939 Capsella grandiflora
Cagra.0133s0109 10.0kb upstream 10.0kb upstream 11653 true Scaffold133: 402940-414592 Capsella grandiflora
Cagra.0133s0109 10.0kb upstream 10.0kb upstream 10000 false Scaffold133: 404593-414592 Capsella grandiflora
Cagra.0133s0109 10.0kb downstream 10.0kb downstream 11653 true Scaffold133: 392940-404592 Capsella grandiflora
Cagra.0133s0109 10.0kb downstream 10.0kb downstream 10000 false Scaffold133: 392940-402939 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365835 5261 Brassicaceae View MSA
123835010 5264 Brassicales-Malvales View MSA
124321992 5266 SBM View MSA
124246530 5268 Malvidae View MSA
124070625 5270 Rosid View MSA
123746709 5271 Pentapetalae View MSA
122795318 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain