Gene : Cagra.0133s0064 C. grandiflora v1.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  64
Name:  ? Cagra.0133s0064 Secondary Identifier:  ? PAC:28899447
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0133s0064 0.5kb upstream 0.5kb upstream 2261 true Scaffold133: 248584-250844 Capsella grandiflora
Cagra.0133s0064 0.5kb upstream 0.5kb upstream 500 false Scaffold133: 248584-249083 Capsella grandiflora
Cagra.0133s0064 0.5kb downstream 0.5kb downstream 2261 true Scaffold133: 249084-251344 Capsella grandiflora
Cagra.0133s0064 0.5kb downstream 0.5kb downstream 500 false Scaffold133: 250845-251344 Capsella grandiflora
Cagra.0133s0064 1.0kb upstream 1.0kb upstream 2761 true Scaffold133: 248084-250844 Capsella grandiflora
Cagra.0133s0064 1.0kb upstream 1.0kb upstream 1000 false Scaffold133: 248084-249083 Capsella grandiflora
Cagra.0133s0064 1.0kb downstream 1.0kb downstream 2761 true Scaffold133: 249084-251844 Capsella grandiflora
Cagra.0133s0064 1.0kb downstream 1.0kb downstream 1000 false Scaffold133: 250845-251844 Capsella grandiflora
Cagra.0133s0064 2.0kb upstream 2.0kb upstream 3761 true Scaffold133: 247084-250844 Capsella grandiflora
Cagra.0133s0064 2.0kb upstream 2.0kb upstream 2000 false Scaffold133: 247084-249083 Capsella grandiflora
Cagra.0133s0064 2.0kb downstream 2.0kb downstream 3761 true Scaffold133: 249084-252844 Capsella grandiflora
Cagra.0133s0064 2.0kb downstream 2.0kb downstream 2000 false Scaffold133: 250845-252844 Capsella grandiflora
Cagra.0133s0064 5.0kb upstream 5.0kb upstream 6761 true Scaffold133: 244084-250844 Capsella grandiflora
Cagra.0133s0064 5.0kb upstream 5.0kb upstream 5000 false Scaffold133: 244084-249083 Capsella grandiflora
Cagra.0133s0064 5.0kb downstream 5.0kb downstream 6761 true Scaffold133: 249084-255844 Capsella grandiflora
Cagra.0133s0064 5.0kb downstream 5.0kb downstream 5000 false Scaffold133: 250845-255844 Capsella grandiflora
Cagra.0133s0064 10.0kb upstream 10.0kb upstream 11761 true Scaffold133: 239084-250844 Capsella grandiflora
Cagra.0133s0064 10.0kb upstream 10.0kb upstream 10000 false Scaffold133: 239084-249083 Capsella grandiflora
Cagra.0133s0064 10.0kb downstream 10.0kb downstream 11761 true Scaffold133: 249084-260844 Capsella grandiflora
Cagra.0133s0064 10.0kb downstream 10.0kb downstream 10000 false Scaffold133: 250845-260844 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360414 5261 Brassicaceae View MSA
123797948 5264 Brassicales-Malvales View MSA
124295645 5266 SBM View MSA
124148023 5268 Malvidae View MSA
123874109 5270 Rosid View MSA
123746059 5271 Pentapetalae View MSA
122771759 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain