Gene : Cagra.0117s0013 C. grandiflora v1.1
Defline:  (1 of 1) PTHR12300//PTHR12300:SF58 - HVA22-LIKE PROTEINS Genomic Order:  13
Name:  ? Cagra.0117s0013 Secondary Identifier:  ? PAC:28919148
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0117s0013 0.5kb upstream 0.5kb upstream 1676 true Scaffold117: 46245-47920 Capsella grandiflora
Cagra.0117s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold117: 47421-47920 Capsella grandiflora
Cagra.0117s0013 0.5kb downstream 0.5kb downstream 1676 true Scaffold117: 45745-47420 Capsella grandiflora
Cagra.0117s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold117: 45745-46244 Capsella grandiflora
Cagra.0117s0013 1.0kb upstream 1.0kb upstream 2176 true Scaffold117: 46245-48420 Capsella grandiflora
Cagra.0117s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold117: 47421-48420 Capsella grandiflora
Cagra.0117s0013 1.0kb downstream 1.0kb downstream 2176 true Scaffold117: 45245-47420 Capsella grandiflora
Cagra.0117s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold117: 45245-46244 Capsella grandiflora
Cagra.0117s0013 2.0kb upstream 2.0kb upstream 3176 true Scaffold117: 46245-49420 Capsella grandiflora
Cagra.0117s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold117: 47421-49420 Capsella grandiflora
Cagra.0117s0013 2.0kb downstream 2.0kb downstream 3176 true Scaffold117: 44245-47420 Capsella grandiflora
Cagra.0117s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold117: 44245-46244 Capsella grandiflora
Cagra.0117s0013 5.0kb upstream 5.0kb upstream 6176 true Scaffold117: 46245-52420 Capsella grandiflora
Cagra.0117s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold117: 47421-52420 Capsella grandiflora
Cagra.0117s0013 5.0kb downstream 5.0kb downstream 6176 true Scaffold117: 41245-47420 Capsella grandiflora
Cagra.0117s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold117: 41245-46244 Capsella grandiflora
Cagra.0117s0013 10.0kb upstream 10.0kb upstream 11176 true Scaffold117: 46245-57420 Capsella grandiflora
Cagra.0117s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold117: 47421-57420 Capsella grandiflora
Cagra.0117s0013 10.0kb downstream 10.0kb downstream 11176 true Scaffold117: 36245-47420 Capsella grandiflora
Cagra.0117s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold117: 36245-46244 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374748 5261 Brassicaceae View MSA
123830573 5264 Brassicales-Malvales View MSA
124341448 5266 SBM View MSA
124248122 5268 Malvidae View MSA
124062938 5270 Rosid View MSA
123747497 5271 Pentapetalae View MSA
122794612 5272 Eudicot View MSA
122049450 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain