Gene : Cagra.0096s0045 C. grandiflora v1.1
Defline:  (1 of 2) PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  45
Name:  ? Cagra.0096s0045 Secondary Identifier:  ? PAC:28897014
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0096s0045 0.5kb upstream 0.5kb upstream 4251 true Scaffold96: 209821-214071 Capsella grandiflora
Cagra.0096s0045 0.5kb upstream 0.5kb upstream 500 false Scaffold96: 213572-214071 Capsella grandiflora
Cagra.0096s0045 0.5kb downstream 0.5kb downstream 4251 true Scaffold96: 209321-213571 Capsella grandiflora
Cagra.0096s0045 0.5kb downstream 0.5kb downstream 500 false Scaffold96: 209321-209820 Capsella grandiflora
Cagra.0096s0045 1.0kb upstream 1.0kb upstream 4751 true Scaffold96: 209821-214571 Capsella grandiflora
Cagra.0096s0045 1.0kb upstream 1.0kb upstream 1000 false Scaffold96: 213572-214571 Capsella grandiflora
Cagra.0096s0045 1.0kb downstream 1.0kb downstream 4751 true Scaffold96: 208821-213571 Capsella grandiflora
Cagra.0096s0045 1.0kb downstream 1.0kb downstream 1000 false Scaffold96: 208821-209820 Capsella grandiflora
Cagra.0096s0045 2.0kb upstream 2.0kb upstream 5751 true Scaffold96: 209821-215571 Capsella grandiflora
Cagra.0096s0045 2.0kb upstream 2.0kb upstream 2000 false Scaffold96: 213572-215571 Capsella grandiflora
Cagra.0096s0045 2.0kb downstream 2.0kb downstream 5751 true Scaffold96: 207821-213571 Capsella grandiflora
Cagra.0096s0045 2.0kb downstream 2.0kb downstream 2000 false Scaffold96: 207821-209820 Capsella grandiflora
Cagra.0096s0045 5.0kb upstream 5.0kb upstream 8751 true Scaffold96: 209821-218571 Capsella grandiflora
Cagra.0096s0045 5.0kb upstream 5.0kb upstream 5000 false Scaffold96: 213572-218571 Capsella grandiflora
Cagra.0096s0045 5.0kb downstream 5.0kb downstream 8751 true Scaffold96: 204821-213571 Capsella grandiflora
Cagra.0096s0045 5.0kb downstream 5.0kb downstream 5000 false Scaffold96: 204821-209820 Capsella grandiflora
Cagra.0096s0045 10.0kb upstream 10.0kb upstream 13751 true Scaffold96: 209821-223571 Capsella grandiflora
Cagra.0096s0045 10.0kb upstream 10.0kb upstream 10000 false Scaffold96: 213572-223571 Capsella grandiflora
Cagra.0096s0045 10.0kb downstream 10.0kb downstream 13751 true Scaffold96: 199821-213571 Capsella grandiflora
Cagra.0096s0045 10.0kb downstream 10.0kb downstream 10000 false Scaffold96: 199821-209820 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511102 5273 Angiosperm View MSA
122372331 5261 Brassicaceae View MSA
123800338 5264 Brassicales-Malvales View MSA
124297759 5266 SBM View MSA
124149566 5268 Malvidae View MSA
123875351 5270 Rosid View MSA
123459185 5271 Pentapetalae View MSA
122494580 5272 Eudicot View MSA
120784167 5274 Embryophyte View MSA
122826101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain