Gene : Cagra.0090s0009 C. grandiflora v1.1
Defline:  (1 of 3) PTHR21290//PTHR21290:SF29 - SPHINGOMYELIN SYNTHETASE Genomic Order:  9
Name:  ? Cagra.0090s0009 Secondary Identifier:  ? PAC:28902668
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0090s0009 0.5kb upstream 0.5kb upstream 3610 true Scaffold90: 26803-30412 Capsella grandiflora
Cagra.0090s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold90: 26803-27302 Capsella grandiflora
Cagra.0090s0009 0.5kb downstream 0.5kb downstream 3610 true Scaffold90: 27303-30912 Capsella grandiflora
Cagra.0090s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold90: 30413-30912 Capsella grandiflora
Cagra.0090s0009 1.0kb upstream 1.0kb upstream 4110 true Scaffold90: 26303-30412 Capsella grandiflora
Cagra.0090s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold90: 26303-27302 Capsella grandiflora
Cagra.0090s0009 1.0kb downstream 1.0kb downstream 4110 true Scaffold90: 27303-31412 Capsella grandiflora
Cagra.0090s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold90: 30413-31412 Capsella grandiflora
Cagra.0090s0009 2.0kb upstream 2.0kb upstream 5110 true Scaffold90: 25303-30412 Capsella grandiflora
Cagra.0090s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold90: 25303-27302 Capsella grandiflora
Cagra.0090s0009 2.0kb downstream 2.0kb downstream 5110 true Scaffold90: 27303-32412 Capsella grandiflora
Cagra.0090s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold90: 30413-32412 Capsella grandiflora
Cagra.0090s0009 5.0kb upstream 5.0kb upstream 8110 true Scaffold90: 22303-30412 Capsella grandiflora
Cagra.0090s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold90: 22303-27302 Capsella grandiflora
Cagra.0090s0009 5.0kb downstream 5.0kb downstream 8110 true Scaffold90: 27303-35412 Capsella grandiflora
Cagra.0090s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold90: 30413-35412 Capsella grandiflora
Cagra.0090s0009 10.0kb upstream 10.0kb upstream 13110 true Scaffold90: 17303-30412 Capsella grandiflora
Cagra.0090s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold90: 17303-27302 Capsella grandiflora
Cagra.0090s0009 10.0kb downstream 10.0kb downstream 13110 true Scaffold90: 27303-40412 Capsella grandiflora
Cagra.0090s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold90: 30413-40412 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375004 5261 Brassicaceae View MSA
123838533 5264 Brassicales-Malvales View MSA
124344275 5266 SBM View MSA
124243094 5268 Malvidae View MSA
124064547 5270 Rosid View MSA
123744784 5271 Pentapetalae View MSA
122788943 5272 Eudicot View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain